RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 MTERF4Q7Z6M4 381 aaKnown RBP16.44■□□□□ 0.22
NPHP4-208ENST00000478423 USP48Q86UV5 1035 aa16.44■□□□□ 0.22
NPHP4-208ENST00000478423 MIGA1Q8NAN2 632 aa16.44■□□□□ 0.22
NPHP4-208ENST00000478423 RAB34Q9BZG1 259 aa16.44■□□□□ 0.22
NPHP4-208ENST00000478423 TNNI3KQ59H18 835 aa16.44■□□□□ 0.22
NPHP4-208ENST00000478423 ZNF594Q96JF6 807 aaPredicted RBP16.44■□□□□ 0.22
NPHP4-208ENST00000478423 FPGT-TNNI3KV9GXZ4 949 aa16.44■□□□□ 0.22
NPHP4-208ENST00000478423 F13A1P00488 732 aa16.44■□□□□ 0.22
NPHP4-208ENST00000478423 PRM3Q9NNZ6 103 aa16.44■□□□□ 0.22
NPHP4-208ENST00000478423 RAD50Q92878 1312 aa16.44■□□□□ 0.22
NPHP4-208ENST00000478423 ROBO2Q9HCK4 1378 aa16.44■□□□□ 0.22
NPHP4-208ENST00000478423 PRDM15P57071 1507 aaPredicted RBP16.43■□□□□ 0.22
NPHP4-208ENST00000478423 RTN1Q16799 776 aa16.43■□□□□ 0.22
NPHP4-208ENST00000478423 DHX32Q7L7V1 743 aaKnown RBP16.43■□□□□ 0.22
NPHP4-208ENST00000478423 MAP7D2Q96T17 732 aa16.43■□□□□ 0.22
NPHP4-208ENST00000478423 NYXQ9GZU5 481 aa16.43■□□□□ 0.22
NPHP4-208ENST00000478423 PDCL3Q9H2J4 239 aa16.43■□□□□ 0.22
NPHP4-208ENST00000478423 ABCC4O15439 1325 aa16.43■□□□□ 0.22
NPHP4-208ENST00000478423 EPB41L2O43491 1005 aaKnown RBP16.43■□□□□ 0.22
NPHP4-208ENST00000478423 UBA7P41226 1012 aa16.43■□□□□ 0.22
NPHP4-208ENST00000478423 ISM2Q6H9L7 571 aa16.43■□□□□ 0.22
NPHP4-208ENST00000478423 ITGA6P23229 1130 aa16.43■□□□□ 0.22
NPHP4-208ENST00000478423 IFIT1BQ5T764 474 aaKnown RBP16.43■□□□□ 0.22
NPHP4-208ENST00000478423 CCDC102BQ68D86 513 aa16.43■□□□□ 0.22
NPHP4-208ENST00000478423 TRMT2AQ8IZ69 625 aaKnown RBP16.43■□□□□ 0.22
NPHP4-208ENST00000478423 CLIP2Q9UDT6 1046 aa16.43■□□□□ 0.22
NPHP4-208ENST00000478423 F8W031 263 aaPredicted RBP16.42■□□□□ 0.22
NPHP4-208ENST00000478423 APOBRQ0VD83 1088 aa16.42■□□□□ 0.22
NPHP4-208ENST00000478423 RAB3GAP1Q15042 981 aa16.42■□□□□ 0.22
NPHP4-208ENST00000478423 MAGEB6Q8N7X4 407 aa16.42■□□□□ 0.22
NPHP4-208ENST00000478423 PRR36Q9H6K5 1346 aa16.42■□□□□ 0.22
NPHP4-208ENST00000478423 CHD1O14646 1710 aa16.42■□□□□ 0.22
NPHP4-208ENST00000478423 HLA-DOAP06340 250 aa16.42■□□□□ 0.22
NPHP4-208ENST00000478423 GSTO1P78417 241 aa16.42■□□□□ 0.22
NPHP4-208ENST00000478423 ZCCHC11Q5TAX3 1644 aaKnown RBP16.42■□□□□ 0.22
NPHP4-208ENST00000478423 INTS4Q96HW7 963 aaKnown RBP16.42■□□□□ 0.22
NPHP4-208ENST00000478423 CFAP74Q9C0B2 1584 aa16.42■□□□□ 0.22
NPHP4-208ENST00000478423 PLEKHG1Q9ULL1 1385 aa16.42■□□□□ 0.22
NPHP4-208ENST00000478423 ARHGAP29Q52LW3 1261 aa16.42■□□□□ 0.22
NPHP4-208ENST00000478423 CCDC12Q8WUD4 166 aaPredicted RBP16.42■□□□□ 0.22
NPHP4-208ENST00000478423 CDCA7Q9BWT1 371 aaPredicted RBP16.42■□□□□ 0.22
NPHP4-208ENST00000478423 AATKQ6ZMQ8 1374 aa16.41■□□□□ 0.22
NPHP4-208ENST00000478423 GNPATO15228 680 aa16.41■□□□□ 0.22
NPHP4-208ENST00000478423 RUFY3Q7L099 469 aa16.41■□□□□ 0.22
NPHP4-208ENST00000478423 TMEM266Q2M3C6 531 aa16.41■□□□□ 0.22
NPHP4-208ENST00000478423 TCP11L1Q9NUJ3 509 aa16.41■□□□□ 0.22
NPHP4-208ENST00000478423 DACT1Q9NYF0 836 aa16.41■□□□□ 0.22
NPHP4-208ENST00000478423 ZNF521Q96K83 1311 aa16.41■□□□□ 0.22
NPHP4-208ENST00000478423 SGSM2O43147 1006 aa16.41■□□□□ 0.22
NPHP4-208ENST00000478423 TOP1P11387 765 aaKnown RBP16.41■□□□□ 0.22
NPHP4-208ENST00000478423 ADCY5O95622 1261 aa16.41■□□□□ 0.22
NPHP4-208ENST00000478423 STX1AQ16623 288 aa16.41■□□□□ 0.22
NPHP4-208ENST00000478423 FAM135BQ49AJ0 1406 aa16.4■□□□□ 0.22
NPHP4-208ENST00000478423 TSPY3P0CV98 308 aa16.4■□□□□ 0.22
NPHP4-208ENST00000478423 TSPY8P0CW00 308 aa16.4■□□□□ 0.22
NPHP4-208ENST00000478423 CCDC129Q6ZRS4 1044 aa16.4■□□□□ 0.22
NPHP4-208ENST00000478423 FAM227BQ96M60 508 aa16.4■□□□□ 0.22
NPHP4-208ENST00000478423 MAGEB6P1A0A0J9YX57 407 aa16.4■□□□□ 0.22
NPHP4-208ENST00000478423 ZC3H12CQ9C0D7 883 aaKnown RBP16.4■□□□□ 0.22
NPHP4-208ENST00000478423 IDEP14735 1019 aa16.4■□□□□ 0.22
NPHP4-208ENST00000478423 PHKG2P15735 406 aa16.4■□□□□ 0.22
NPHP4-208ENST00000478423 LRSAM1Q6UWE0 723 aa16.4■□□□□ 0.22
NPHP4-208ENST00000478423 JAG2Q9Y219 1238 aa16.4■□□□□ 0.22
NPHP4-208ENST00000478423 SYKP43405 635 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 NDUFB9Q9Y6M9 179 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 SYT1P21579 422 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 PARP10Q53GL7 1025 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 KCNG4Q8TDN1 519 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 FEZ1Q99689 392 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 UQCRHLA0A096LP55 91 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 UQCRHP07919 91 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 CABP5Q9NP86 173 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 TFCP2L1Q9NZI6 479 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 RTL1A6NKG5 1358 aa16.39■□□□□ 0.21
NPHP4-208ENST00000478423 ERCC4Q92889 916 aaPredicted RBP16.39■□□□□ 0.21
NPHP4-208ENST00000478423 TMEM94Q12767 1356 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 GNAT2P19087 354 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 PTPN14Q15678 1187 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 MCM9Q9NXL9 1143 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 CAVIN2O95810 425 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 MARCKSP29966 332 aaPredicted RBP16.38■□□□□ 0.21
NPHP4-208ENST00000478423 ARHGEF25Q86VW2 580 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 PTPDC1A2A3K4 754 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 NEURL1BA8MQ27 555 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 PDE8AO60658 829 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 SSH3Q8TE77 659 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 CUL5Q93034 780 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 XAGE2Q96GT9 111 aa16.38■□□□□ 0.21
NPHP4-208ENST00000478423 MBD4O95243 580 aa16.37■□□□□ 0.21
NPHP4-208ENST00000478423 RXRAP19793 462 aa16.37■□□□□ 0.21
NPHP4-208ENST00000478423 ZNF804AQ7Z570 1209 aa16.37■□□□□ 0.21
NPHP4-208ENST00000478423 MRPS27Q92552 414 aaKnown RBP16.37■□□□□ 0.21
NPHP4-208ENST00000478423 UBA5Q9GZZ9 404 aa16.37■□□□□ 0.21
NPHP4-208ENST00000478423 AOX1Q06278 1338 aa16.37■□□□□ 0.21
NPHP4-208ENST00000478423 CCDC181Q5TID7 509 aa16.37■□□□□ 0.21
NPHP4-208ENST00000478423 KBTBD3Q8NAB2 608 aa16.37■□□□□ 0.21
NPHP4-208ENST00000478423 CPLX3Q8WVH0 158 aa16.37■□□□□ 0.21
NPHP4-208ENST00000478423 HELLSQ9NRZ9 838 aa16.37■□□□□ 0.21
NPHP4-208ENST00000478423 ERVV-2B6SEH9 535 aa16.37■□□□□ 0.21
NPHP4-208ENST00000478423 XRCC6P12956 609 aaKnown RBP eCLIP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms