RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MYL6BP14649 208 aa15.4■□□□□ 0.06
SQSTM1-206ENST00000466342 TM4SF4P48230 202 aa15.4■□□□□ 0.06
SQSTM1-206ENST00000466342 FKBP1BP68106 108 aa15.4■□□□□ 0.06
SQSTM1-206ENST00000466342 PARP10Q53GL7 1025 aa15.4■□□□□ 0.06
SQSTM1-206ENST00000466342 INTS3Q68E01 1043 aaKnown RBP15.4■□□□□ 0.06
SQSTM1-206ENST00000466342 GIGYF2Q6Y7W6 1299 aaKnown RBP15.4■□□□□ 0.06
SQSTM1-206ENST00000466342 CDCA5Q96FF9 252 aa15.4■□□□□ 0.06
SQSTM1-206ENST00000466342 ZBTB3Q9H5J0 574 aa15.4■□□□□ 0.06
SQSTM1-206ENST00000466342 LAS1LQ9Y4W2 734 aaKnown RBP15.4■□□□□ 0.06
SQSTM1-206ENST00000466342 ZNF853P0CG23 659 aa15.39■□□□□ 0.05
SQSTM1-206ENST00000466342 IFT57Q9NWB7 429 aa15.39■□□□□ 0.05
SQSTM1-206ENST00000466342 SALL2Q9Y467 1007 aaPredicted RBP15.39■□□□□ 0.05
SQSTM1-206ENST00000466342 DDX60Q8IY21 1712 aaKnown RBP15.38■□□□□ 0.05
SQSTM1-206ENST00000466342 DUOX1Q9NRD9 1551 aa15.38■□□□□ 0.05
SQSTM1-206ENST00000466342 POTEFA5A3E0 1075 aa15.38■□□□□ 0.05
SQSTM1-206ENST00000466342 FKTNO75072 461 aa15.38■□□□□ 0.05
SQSTM1-206ENST00000466342 GNAI1P63096 354 aa15.38■□□□□ 0.05
SQSTM1-206ENST00000466342 WASHC4Q2M389 1173 aa15.38■□□□□ 0.05
SQSTM1-206ENST00000466342 KIF4BQ2VIQ3 1234 aa15.38■□□□□ 0.05
SQSTM1-206ENST00000466342 GGA3Q9NZ52 723 aa15.38■□□□□ 0.05
SQSTM1-206ENST00000466342 IL16Q14005 1332 aa15.38■□□□□ 0.05
SQSTM1-206ENST00000466342 CENPFP49454 3210 aa15.37■□□□□ 0.05
SQSTM1-206ENST00000466342 EIF2S2P20042 333 aaKnown RBP15.37■□□□□ 0.05
SQSTM1-206ENST00000466342 PDIA6Q15084 440 aa15.37■□□□□ 0.05
SQSTM1-206ENST00000466342 DDX46Q7L014 1031 aaKnown RBP15.37■□□□□ 0.05
SQSTM1-206ENST00000466342 UTP14AQ9BVJ6 771 aaKnown RBP15.37■□□□□ 0.05
SQSTM1-206ENST00000466342 DBNDD1Q9H9R9 158 aa15.37■□□□□ 0.05
SQSTM1-206ENST00000466342 MBIPQ9NS73 344 aa15.37■□□□□ 0.05
SQSTM1-206ENST00000466342 LRRC37AA6NMS7 1700 aa15.37■□□□□ 0.05
SQSTM1-206ENST00000466342 KIAA0100Q14667 2235 aaKnown RBP15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 DLL1O00548 723 aa15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 GRAPQ13588 217 aa15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 TMC4Q7Z404 712 aa15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 LRP10Q7Z4F1 713 aa15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 WDR63Q8IWG1 891 aa15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 GRAPLQ8TC17 118 aaPredicted RBP15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 CFHR5Q9BXR6 569 aa15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 KCNQ5Q9NR82 932 aa15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 COLQQ9Y215 455 aaPredicted RBP15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 ASTN2O75129 1339 aaPredicted RBP15.36■□□□□ 0.05
SQSTM1-206ENST00000466342 SCN9AQ15858 1988 aa15.35■□□□□ 0.05
SQSTM1-206ENST00000466342 ZNF521Q96K83 1311 aa15.35■□□□□ 0.05
SQSTM1-206ENST00000466342 HTTP42858 3142 aa15.34■□□□□ 0.05
SQSTM1-206ENST00000466342 RIMBP2O15034 1052 aa15.34■□□□□ 0.05
SQSTM1-206ENST00000466342 HOXB7P09629 217 aa15.34■□□□□ 0.05
SQSTM1-206ENST00000466342 ANGEL2Q5VTE6 544 aaKnown RBP15.34■□□□□ 0.05
SQSTM1-206ENST00000466342 SZT2Q5T011 3432 aa15.33■□□□□ 0.05
SQSTM1-206ENST00000466342 UBE2Q2LH0YL09 131 aa15.33■□□□□ 0.04
SQSTM1-206ENST00000466342 ECE2O60344 883 aa15.33■□□□□ 0.04
SQSTM1-206ENST00000466342 VIL1P09327 827 aaKnown RBP15.33■□□□□ 0.04
SQSTM1-206ENST00000466342 SCARF1Q14162 830 aa15.33■□□□□ 0.04
SQSTM1-206ENST00000466342 MOB2Q70IA6 237 aa15.33■□□□□ 0.04
SQSTM1-206ENST00000466342 R3HDMLQ9H3Y0 253 aa15.33■□□□□ 0.04
SQSTM1-206ENST00000466342 NSFL1CQ9UNZ2 370 aaKnown RBP15.33■□□□□ 0.04
SQSTM1-206ENST00000466342 RTL9Q8NET4 1388 aa15.33■□□□□ 0.04
SQSTM1-206ENST00000466342 HCLS1P14317 486 aaPredicted RBP15.32■□□□□ 0.04
SQSTM1-206ENST00000466342 SREBF2Q12772 1141 aa15.32■□□□□ 0.04
SQSTM1-206ENST00000466342 DOK7Q18PE1 504 aa15.32■□□□□ 0.04
SQSTM1-206ENST00000466342 KRT24Q2M2I5 525 aa15.32■□□□□ 0.04
SQSTM1-206ENST00000466342 PROSER3Q2NL68 480 aa15.32■□□□□ 0.04
SQSTM1-206ENST00000466342 COPS6Q7L5N1 327 aa15.32■□□□□ 0.04
SQSTM1-206ENST00000466342 PSME4Q14997 1843 aa15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 C6orf229H3BNL8 230 aa15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 ANXA1P04083 346 aa15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 EN2P19622 333 aaPredicted RBP15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 HSP90AB3PQ58FF7 597 aa15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 NECTIN2Q92692 538 aa15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 TSR2Q969E8 191 aaKnown RBP15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 POLLQ9UGP5 575 aa15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 TRIM17Q9Y577 477 aa15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 PITPNM2Q9BZ72 1349 aa15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 BRCA2P51587 3418 aa15.31■□□□□ 0.04
SQSTM1-206ENST00000466342 CACNA1FO60840 1977 aa15.3■□□□□ 0.04
SQSTM1-206ENST00000466342 ZNF280AP59817 542 aaPredicted RBP15.3■□□□□ 0.04
SQSTM1-206ENST00000466342 OTOP1Q7RTM1 612 aa15.3■□□□□ 0.04
SQSTM1-206ENST00000466342 SLC17A8Q8NDX2 589 aa15.3■□□□□ 0.04
SQSTM1-206ENST00000466342 XAGE3Q8WTP9 111 aa15.3■□□□□ 0.04
SQSTM1-206ENST00000466342 EYA3Q99504 573 aa15.3■□□□□ 0.04
SQSTM1-206ENST00000466342 FANCIQ9NVI1 1328 aa15.3■□□□□ 0.04
SQSTM1-206ENST00000466342 DBF4Q9UBU7 674 aaPredicted RBP15.3■□□□□ 0.04
SQSTM1-206ENST00000466342 ALDH1A1P00352 501 aa15.29■□□□□ 0.04
SQSTM1-206ENST00000466342 AIMP1Q12904 312 aaKnown RBP15.29■□□□□ 0.04
SQSTM1-206ENST00000466342 MKRN3Q13064 507 aaKnown RBP15.29■□□□□ 0.04
SQSTM1-206ENST00000466342 HDGFL1Q5TGJ6 251 aa15.29■□□□□ 0.04
SQSTM1-206ENST00000466342 DUSP27Q5VZP5 1158 aa15.29■□□□□ 0.04
SQSTM1-206ENST00000466342 AGBL3Q8NEM8 1001 aa15.29■□□□□ 0.04
SQSTM1-206ENST00000466342 SPINK5Q9NQ38 1064 aaPredicted RBP15.29■□□□□ 0.04
SQSTM1-206ENST00000466342 GOLGA2Q08379 1002 aa15.28■□□□□ 0.04
SQSTM1-206ENST00000466342 TTLL12Q14166 644 aaPredicted RBP15.28■□□□□ 0.04
SQSTM1-206ENST00000466342 NLRP10Q86W26 655 aa15.28■□□□□ 0.04
SQSTM1-206ENST00000466342 ZC3H12CQ9C0D7 883 aaKnown RBP15.28■□□□□ 0.04
SQSTM1-206ENST00000466342 MYH16Q9H6N6 1097 aa15.28■□□□□ 0.04
SQSTM1-206ENST00000466342 CHPF2Q9P2E5 772 aa15.28■□□□□ 0.04
SQSTM1-206ENST00000466342 TRMT112Q9UI30 125 aaKnown RBP15.28■□□□□ 0.04
SQSTM1-206ENST00000466342 TRIOBPQ9H2D6 2365 aa15.27■□□□□ 0.04
SQSTM1-206ENST00000466342 GPSM2P81274 684 aa15.27■□□□□ 0.04
SQSTM1-206ENST00000466342 HNRNPUQ00839 825 aaKnown RBP eCLIP15.27■□□□□ 0.04
SQSTM1-206ENST00000466342 TCIRG1Q13488 830 aa15.27■□□□□ 0.04
SQSTM1-206ENST00000466342 C8orf58Q8NAV2 365 aa15.27■□□□□ 0.04
SQSTM1-206ENST00000466342 OTUD5Q96G74 571 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms