RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 NR1I2O75469 434 aa11.18□□□□□ -0.62
KLHL3-202ENST00000447439 GTF3C6Q969F1 213 aa11.18□□□□□ -0.62
KLHL3-202ENST00000447439 PGBD1Q96JS3 809 aa11.18□□□□□ -0.62
KLHL3-202ENST00000447439 STRN4Q9NRL3 753 aa11.18□□□□□ -0.62
KLHL3-202ENST00000447439 GOLGA6L4A6NEF3 574 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 ANKRD1Q15327 319 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 FAM184AQ8NB25 1140 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 BICD2Q8TD16 824 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 LEO1Q8WVC0 666 aaPredicted RBP11.17□□□□□ -0.62
KLHL3-202ENST00000447439 NUP62CLQ9H1M0 184 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 H3BQV1 296 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 HAND2P61296 217 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 FKBP4Q02790 459 aaKnown RBP eCLIP11.17□□□□□ -0.62
KLHL3-202ENST00000447439 CSPP1Q1MSJ5 1256 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 IFFO2Q5TF58 517 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 USPL1Q5W0Q7 1092 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 SYNE4Q8N205 404 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 FBXW7Q969H0 707 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 PAG1Q9NWQ8 432 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 MRVI1Q9Y6F6 885 aa11.17□□□□□ -0.62
KLHL3-202ENST00000447439 LETM1O95202 739 aaPredicted RBP11.16□□□□□ -0.62
KLHL3-202ENST00000447439 ADORA1P30542 326 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 TYRO3Q06418 890 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 PI16Q6UXB8 463 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 KBTBD3Q8NAB2 608 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 ERCC4Q92889 916 aaPredicted RBP11.16□□□□□ -0.62
KLHL3-202ENST00000447439 TNMDQ9H2S6 317 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 HMG20BQ9P0W2 317 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 PYCARDQ9ULZ3 195 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 M0R2C6 588 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 MAP3K11Q16584 847 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 UVSSAQ2YD98 709 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 ANO6Q4KMQ2 910 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 KCNF1Q9H3M0 494 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 PRDM11Q9NQV5 511 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 CWC25Q9NXE8 425 aaPredicted RBP11.16□□□□□ -0.62
KLHL3-202ENST00000447439 SCN11AQ9UI33 1791 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 MRC1P22897 1456 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 JCADQ9P266 1359 aa11.16□□□□□ -0.62
KLHL3-202ENST00000447439 A0A1B0GUL7 405 aa11.15□□□□□ -0.62
KLHL3-202ENST00000447439 H7C1W4 665 aa11.15□□□□□ -0.62
KLHL3-202ENST00000447439 RRP9O43818 475 aaKnown RBP11.15□□□□□ -0.62
KLHL3-202ENST00000447439 CTDNEP1O95476 244 aa11.15□□□□□ -0.62
KLHL3-202ENST00000447439 CCDC192P0DO97 292 aa11.15□□□□□ -0.62
KLHL3-202ENST00000447439 U3KPZ7 1027 aaPredicted RBP11.15□□□□□ -0.62
KLHL3-202ENST00000447439 KIF1AQ12756 1690 aa11.15□□□□□ -0.62
KLHL3-202ENST00000447439 PDCP20941 246 aa11.15□□□□□ -0.62
KLHL3-202ENST00000447439 RESTQ13127 1097 aa11.15□□□□□ -0.62
KLHL3-202ENST00000447439 OTUD7BQ6GQQ9 843 aa11.15□□□□□ -0.62
KLHL3-202ENST00000447439 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.15□□□□□ -0.62
KLHL3-202ENST00000447439 ALS2Q96Q42 1657 aa11.15□□□□□ -0.63
KLHL3-202ENST00000447439 IFIT1P09914 478 aaKnown RBP11.14□□□□□ -0.63
KLHL3-202ENST00000447439 MCM5P33992 734 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 SCARF1Q14162 830 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 NOLC1Q14978 699 aaKnown RBP eCLIP11.14□□□□□ -0.63
KLHL3-202ENST00000447439 TSGA10IPQ3SY00 556 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 ZCRB1Q8TBF4 217 aaKnown RBP11.14□□□□□ -0.63
KLHL3-202ENST00000447439 UBE2Q2Q8WVN8 375 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 FAM89AQ96GI7 184 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 MAST3O60307 1309 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 PTPDC1A2A3K4 754 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 HSPD1P10809 573 aaKnown RBP11.14□□□□□ -0.63
KLHL3-202ENST00000447439 DNAJC25Q9H1X3 360 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 CBX8Q9HC52 389 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 NRBP1Q9UHY1 535 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 SPATA31A3Q5VYP0 1347 aa11.14□□□□□ -0.63
KLHL3-202ENST00000447439 AFDNP55196 1824 aaKnown RBP11.14□□□□□ -0.63
KLHL3-202ENST00000447439 E7EWF7 191 aa11.13□□□□□ -0.63
KLHL3-202ENST00000447439 PTGS1P23219 599 aa11.13□□□□□ -0.63
KLHL3-202ENST00000447439 KRT32Q14532 448 aa11.13□□□□□ -0.63
KLHL3-202ENST00000447439 GJB4Q9NTQ9 266 aa11.13□□□□□ -0.63
KLHL3-202ENST00000447439 WASHC4Q2M389 1173 aa11.13□□□□□ -0.63
KLHL3-202ENST00000447439 NSUN7Q8NE18 718 aaKnown RBP11.13□□□□□ -0.63
KLHL3-202ENST00000447439 PIBF1Q8WXW3 757 aa11.13□□□□□ -0.63
KLHL3-202ENST00000447439 OSBP2Q969R2 916 aa11.13□□□□□ -0.63
KLHL3-202ENST00000447439 BCL11BQ9C0K0 894 aaPredicted RBP11.13□□□□□ -0.63
KLHL3-202ENST00000447439 TNS3Q68CZ2 1445 aa11.13□□□□□ -0.63
KLHL3-202ENST00000447439 EYA2O00167 538 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 GPTP24298 496 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 LRMPQ12912 555 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 SASS6Q6UVJ0 657 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 SCAND2PQ9GZW5 306 aaPredicted RBP11.12□□□□□ -0.63
KLHL3-202ENST00000447439 DENND2AQ9ULE3 1009 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 ARFGEF2Q9Y6D5 1785 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 GORABQ5T7V8 394 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 DHX32Q7L7V1 743 aaKnown RBP11.12□□□□□ -0.63
KLHL3-202ENST00000447439 FAM200AQ8TCP9 573 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 ALDH8A1Q9H2A2 487 aaPredicted RBP11.12□□□□□ -0.63
KLHL3-202ENST00000447439 GOLPH3LQ9H4A5 285 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 COL18A1P39060 1754 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 ZMYM1Q5SVZ6 1142 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 DRC7Q8IY82 874 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 NKX2-3Q8TAU0 364 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 CLSTN2Q9H4D0 955 aa11.12□□□□□ -0.63
KLHL3-202ENST00000447439 ELP1O95163 1332 aa11.11□□□□□ -0.63
KLHL3-202ENST00000447439 SH3TC1Q8TE82 1336 aa11.11□□□□□ -0.63
KLHL3-202ENST00000447439 IL15P40933 162 aaPredicted RBP11.11□□□□□ -0.63
KLHL3-202ENST00000447439 BRINP3Q76B58 766 aa11.11□□□□□ -0.63
KLHL3-202ENST00000447439 USP28Q96RU2 1077 aa11.11□□□□□ -0.63
KLHL3-202ENST00000447439 ASAP1Q9ULH1 1129 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms