RNA–Protein interactions for RNA: ENST00000401921.5

HDAC9-201, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best) BASIC

Gene HDAC9, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-201ENST00000401921 LRRC24Q50LG9 513 aa9.07□□□□□ -0.96
HDAC9-201ENST00000401921 TMEM94Q12767 1356 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 TCHHQ07283 1943 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 LIG1P18858 919 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 ME1P48163 572 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 CHAF1AQ13111 956 aaPredicted RBP9.06□□□□□ -0.96
HDAC9-201ENST00000401921 HS1BP3Q53T59 392 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 RALYLQ86SE5 291 aaKnown RBP9.06□□□□□ -0.96
HDAC9-201ENST00000401921 FAM89AQ96GI7 184 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 NCOA5Q9HCD5 579 aaKnown RBP9.06□□□□□ -0.96
HDAC9-201ENST00000401921 CNNM1Q9NRU3 951 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 KIF6Q6ZMV9 814 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 CCDC73Q6ZRK6 1079 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 STK11IPQ8N1F8 1099 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 TMOD3Q9NYL9 352 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 NALCNQ8IZF0 1738 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 A0A1B0GUL7 405 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 CYP21A2P08686 494 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 KLHL34Q8N239 644 aa9.06□□□□□ -0.96
HDAC9-201ENST00000401921 USP42Q9H9J4 1324 aaKnown RBP9.05□□□□□ -0.96
HDAC9-201ENST00000401921 CACNA1FO60840 1977 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 UVSSAQ2YD98 709 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 LUZP1Q86V48 1076 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 PLCD3Q8N3E9 789 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 KBTBD3Q8NAB2 608 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 PDLIM2Q96JY6 352 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 SDF4Q9BRK5 362 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 PUS3Q9BZE2 481 aaKnown RBP9.05□□□□□ -0.96
HDAC9-201ENST00000401921 IL15P40933 162 aaPredicted RBP9.05□□□□□ -0.96
HDAC9-201ENST00000401921 TRDNQ13061 729 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 LRRFIP1Q32MZ4 808 aaKnown RBP9.05□□□□□ -0.96
HDAC9-201ENST00000401921 METTL24Q5JXM2 366 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 CFAP45Q9UL16 551 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 NWD1Q149M9 1564 aa9.05□□□□□ -0.96
HDAC9-201ENST00000401921 IDH1O75874 414 aaKnown RBP9.04□□□□□ -0.96
HDAC9-201ENST00000401921 CDK11BP21127 795 aaKnown RBP9.04□□□□□ -0.96
HDAC9-201ENST00000401921 IFIT5Q13325 482 aaKnown RBP9.04□□□□□ -0.96
HDAC9-201ENST00000401921 ANO6Q4KMQ2 910 aa9.04□□□□□ -0.96
HDAC9-201ENST00000401921 TTLL5Q6EMB2 1281 aa9.04□□□□□ -0.96
HDAC9-201ENST00000401921 NCAPD2Q15021 1401 aa9.04□□□□□ -0.96
HDAC9-201ENST00000401921 EYA2O00167 538 aa9.04□□□□□ -0.96
HDAC9-201ENST00000401921 KINO60870 393 aaKnown RBP9.04□□□□□ -0.96
HDAC9-201ENST00000401921 TOB2Q14106 344 aaPredicted RBP9.04□□□□□ -0.96
HDAC9-201ENST00000401921 LDHAL6AQ6ZMR3 332 aa9.04□□□□□ -0.96
HDAC9-201ENST00000401921 POLR3DP05423 398 aaPredicted RBP9.04□□□□□ -0.96
HDAC9-201ENST00000401921 TYRO3Q06418 890 aa9.04□□□□□ -0.96
HDAC9-201ENST00000401921 DHX32Q7L7V1 743 aaKnown RBP9.04□□□□□ -0.96
HDAC9-201ENST00000401921 LEO1Q8WVC0 666 aaPredicted RBP9.04□□□□□ -0.96
HDAC9-201ENST00000401921 HAUS7Q99871 368 aa9.04□□□□□ -0.96
HDAC9-201ENST00000401921 LTN1O94822 1766 aa9.04□□□□□ -0.96
HDAC9-201ENST00000401921 NBPF26B4DH59 902 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 IL2RBP14784 551 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 MCM5P33992 734 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 ZNF165P49910 485 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 NBPF14Q5TI25 921 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 NBPF10Q6P3W6 841 aaKnown RBP9.03□□□□□ -0.96
HDAC9-201ENST00000401921 NBPF15Q8N660 670 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 DNAJC25Q9H1X3 360 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.03□□□□□ -0.96
HDAC9-201ENST00000401921 PTPDC1A2A3K4 754 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 VGLL3A8MV65 326 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 HMGB1P09429 215 aaKnown RBP9.03□□□□□ -0.96
HDAC9-201ENST00000401921 NOLC1Q14978 699 aaKnown RBP eCLIP9.03□□□□□ -0.96
HDAC9-201ENST00000401921 IMMTQ16891 758 aaKnown RBP9.03□□□□□ -0.96
HDAC9-201ENST00000401921 SYNE3Q6ZMZ3 975 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 NFXL1Q6ZNB6 911 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 ZNF592Q92610 1267 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 C1orf167Q5SNV9 1468 aa9.03□□□□□ -0.96
HDAC9-201ENST00000401921 ST3GAL1Q11201 340 aa9.02□□□□□ -0.96
HDAC9-201ENST00000401921 STK38Q15208 465 aa9.02□□□□□ -0.96
HDAC9-201ENST00000401921 OTUD7BQ6GQQ9 843 aa9.02□□□□□ -0.96
HDAC9-201ENST00000401921 GTF3C6Q969F1 213 aa9.02□□□□□ -0.96
HDAC9-201ENST00000401921 DDX19AQ9NUU7 478 aaKnown RBP9.02□□□□□ -0.96
HDAC9-201ENST00000401921 FAM208AQ9UK61 1670 aaKnown RBP9.02□□□□□ -0.96
HDAC9-201ENST00000401921 RNF113AO15541 343 aaKnown RBP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 NR1I2O75469 434 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 SCRN1Q12765 414 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 CCAR1Q8IX12 1150 aaKnown RBP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 DNAJC10Q8IXB1 793 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 HELBQ8NG08 1087 aaPredicted RBP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 FAM200AQ8TCP9 573 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 ZNF396Q96N95 335 aaPredicted RBP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 FTOQ9C0B1 505 aaKnown RBP eCLIP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 AKAP2Q9Y2D5 859 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 XRN1Q8IZH2 1706 aaKnown RBP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 UTYO14607 1347 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 PCDH11XQ9BZA7 1347 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 PCDH11YQ9BZA8 1340 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 ZNF500O60304 480 aaPredicted RBP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 STARD3NLO95772 234 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 RRP12Q5JTH9 1297 aaKnown RBP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 MTERF4Q7Z6M4 381 aaKnown RBP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 TMEM87AQ8NBN3 555 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 CCDC191Q8NCU4 936 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 ERCC4Q92889 916 aaPredicted RBP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 TRMT112Q9UI30 125 aaKnown RBP9.02□□□□□ -0.97
HDAC9-201ENST00000401921 CTNNA3Q9UI47 895 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 RGPD2P0DJD1 1756 aa9.02□□□□□ -0.97
HDAC9-201ENST00000401921 ZNF213O14771 459 aa9.01□□□□□ -0.97
HDAC9-201ENST00000401921 HSPD1P10809 573 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms