RNA–Protein interactions for RNA: ENST00000396215.7

LDHC-202, Transcript of lactate dehydrogenase C, humanhuman

TSL 1 (best)

Gene LDHC, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHC-202ENST00000396215 ERBB4Q15303 1308 aa12.87□□□□□ -0.35
LDHC-202ENST00000396215 RBBP6Q7Z6E9 1792 aaKnown RBP12.86□□□□□ -0.35
LDHC-202ENST00000396215 WASHC4Q2M389 1173 aa12.86□□□□□ -0.35
LDHC-202ENST00000396215 KIF4BQ2VIQ3 1234 aa12.86□□□□□ -0.35
LDHC-202ENST00000396215 DDX46Q7L014 1031 aaKnown RBP12.86□□□□□ -0.35
LDHC-202ENST00000396215 NECTIN2Q92692 538 aa12.86□□□□□ -0.35
LDHC-202ENST00000396215 GGA3Q9NZ52 723 aa12.86□□□□□ -0.35
LDHC-202ENST00000396215 RRP7AQ9Y3A4 280 aaKnown RBP12.86□□□□□ -0.35
LDHC-202ENST00000396215 KIAA0100Q14667 2235 aaKnown RBP12.85□□□□□ -0.35
LDHC-202ENST00000396215 RTL9Q8NET4 1388 aa12.85□□□□□ -0.35
LDHC-202ENST00000396215 FKTNO75072 461 aa12.85□□□□□ -0.35
LDHC-202ENST00000396215 VIL1P09327 827 aaKnown RBP12.85□□□□□ -0.35
LDHC-202ENST00000396215 RBM26Q5T8P6 1007 aaKnown RBP12.85□□□□□ -0.35
LDHC-202ENST00000396215 LRP10Q7Z4F1 713 aa12.85□□□□□ -0.35
LDHC-202ENST00000396215 PNISRQ8TF01 805 aaKnown RBP12.85□□□□□ -0.35
LDHC-202ENST00000396215 RANBP2P49792 3224 aaKnown RBP12.85□□□□□ -0.35
LDHC-202ENST00000396215 PITPNM2Q9BZ72 1349 aa12.85□□□□□ -0.35
LDHC-202ENST00000396215 KDM3BQ7LBC6 1761 aa12.84□□□□□ -0.35
LDHC-202ENST00000396215 ZNF280AP59817 542 aaPredicted RBP12.84□□□□□ -0.35
LDHC-202ENST00000396215 EIF4A1P60842 406 aaKnown RBP12.84□□□□□ -0.35
LDHC-202ENST00000396215 DCTN1Q14203 1278 aa12.84□□□□□ -0.35
LDHC-202ENST00000396215 CC2D1BQ5T0F9 858 aaKnown RBP12.84□□□□□ -0.35
LDHC-202ENST00000396215 DBNDD1Q9H9R9 158 aa12.84□□□□□ -0.35
LDHC-202ENST00000396215 DDX60Q8IY21 1712 aaKnown RBP12.84□□□□□ -0.35
LDHC-202ENST00000396215 COL6A3P12111 3177 aa12.83□□□□□ -0.35
LDHC-202ENST00000396215 POTEFA5A3E0 1075 aa12.83□□□□□ -0.36
LDHC-202ENST00000396215 HAX1O00165 279 aa12.83□□□□□ -0.36
LDHC-202ENST00000396215 MYL6BP14649 208 aa12.83□□□□□ -0.36
LDHC-202ENST00000396215 KCNQ5Q9NR82 932 aa12.83□□□□□ -0.36
LDHC-202ENST00000396215 MIS18AQ9NYP9 233 aa12.83□□□□□ -0.36
LDHC-202ENST00000396215 ASTN2O75129 1339 aaPredicted RBP12.83□□□□□ -0.36
LDHC-202ENST00000396215 ECE2O60344 883 aa12.82□□□□□ -0.36
LDHC-202ENST00000396215 POLLQ9UGP5 575 aa12.82□□□□□ -0.36
LDHC-202ENST00000396215 TAF1P21675 1872 aa12.82□□□□□ -0.36
LDHC-202ENST00000396215 CEP290O15078 2479 aa12.82□□□□□ -0.36
LDHC-202ENST00000396215 SCN9AQ15858 1988 aa12.81□□□□□ -0.36
LDHC-202ENST00000396215 HCLS1P14317 486 aaPredicted RBP12.81□□□□□ -0.36
LDHC-202ENST00000396215 SREBF2Q12772 1141 aa12.81□□□□□ -0.36
LDHC-202ENST00000396215 SCARF1Q14162 830 aa12.81□□□□□ -0.36
LDHC-202ENST00000396215 PDIA6Q15084 440 aa12.81□□□□□ -0.36
LDHC-202ENST00000396215 HSP90AB3PQ58FF7 597 aa12.81□□□□□ -0.36
LDHC-202ENST00000396215 ANGEL2Q5VTE6 544 aaKnown RBP12.81□□□□□ -0.36
LDHC-202ENST00000396215 NLRP10Q86W26 655 aa12.81□□□□□ -0.36
LDHC-202ENST00000396215 AGBL3Q8NEM8 1001 aa12.81□□□□□ -0.36
LDHC-202ENST00000396215 EYA3Q99504 573 aa12.81□□□□□ -0.36
LDHC-202ENST00000396215 TRIOBPQ9H2D6 2365 aa12.81□□□□□ -0.36
LDHC-202ENST00000396215 CLSPNQ9HAW4 1339 aa12.81□□□□□ -0.36
LDHC-202ENST00000396215 ALDH1A1P00352 501 aa12.8□□□□□ -0.36
LDHC-202ENST00000396215 R3HDMLQ9H3Y0 253 aa12.8□□□□□ -0.36
LDHC-202ENST00000396215 NSFL1CQ9UNZ2 370 aaKnown RBP12.8□□□□□ -0.36
LDHC-202ENST00000396215 COLQQ9Y215 455 aaPredicted RBP12.8□□□□□ -0.36
LDHC-202ENST00000396215 NUDCQ9Y266 331 aa12.8□□□□□ -0.36
LDHC-202ENST00000396215 UBE2Q2LH0YL09 131 aa12.79□□□□□ -0.36
LDHC-202ENST00000396215 RIMBP2O15034 1052 aa12.79□□□□□ -0.36
LDHC-202ENST00000396215 SF3B3Q15393 1217 aaKnown RBP12.79□□□□□ -0.36
LDHC-202ENST00000396215 MOB2Q70IA6 237 aa12.79□□□□□ -0.36
LDHC-202ENST00000396215 OTOP1Q7RTM1 612 aa12.79□□□□□ -0.36
LDHC-202ENST00000396215 ARMC5Q96C12 935 aa12.79□□□□□ -0.36
LDHC-202ENST00000396215 GMLQ99445 158 aa12.79□□□□□ -0.36
LDHC-202ENST00000396215 SH3TC1Q8TE82 1336 aa12.79□□□□□ -0.36
LDHC-202ENST00000396215 CUL9Q8IWT3 2517 aa12.79□□□□□ -0.36
LDHC-202ENST00000396215 PSME4Q14997 1843 aa12.78□□□□□ -0.36
LDHC-202ENST00000396215 C6orf229H3BNL8 230 aa12.78□□□□□ -0.36
LDHC-202ENST00000396215 GPSM2P81274 684 aa12.78□□□□□ -0.36
LDHC-202ENST00000396215 TCIRG1Q13488 830 aa12.78□□□□□ -0.36
LDHC-202ENST00000396215 DOK7Q18PE1 504 aa12.78□□□□□ -0.36
LDHC-202ENST00000396215 RSBN1LQ6PCB5 846 aaPredicted RBP12.78□□□□□ -0.36
LDHC-202ENST00000396215 TBC1D16Q8TBP0 767 aa12.78□□□□□ -0.36
LDHC-202ENST00000396215 CELF1Q92879 486 aaKnown RBP12.78□□□□□ -0.36
LDHC-202ENST00000396215 CFAP53Q96M91 514 aa12.78□□□□□ -0.36
LDHC-202ENST00000396215 PODXL2Q9NZ53 605 aa12.78□□□□□ -0.36
LDHC-202ENST00000396215 TRMT112Q9UI30 125 aaKnown RBP12.78□□□□□ -0.36
LDHC-202ENST00000396215 U2AF1L5P0DN76 240 aaPredicted RBP12.77□□□□□ -0.37
LDHC-202ENST00000396215 INHBEP58166 350 aa12.77□□□□□ -0.37
LDHC-202ENST00000396215 U2AF1Q01081 240 aaKnown RBP eCLIP12.77□□□□□ -0.37
LDHC-202ENST00000396215 OTUD5Q96G74 571 aa12.77□□□□□ -0.37
LDHC-202ENST00000396215 ZC3H12CQ9C0D7 883 aaKnown RBP12.77□□□□□ -0.37
LDHC-202ENST00000396215 MYOZ2Q9NPC6 264 aa12.77□□□□□ -0.37
LDHC-202ENST00000396215 PTPN22Q9Y2R2 807 aa12.77□□□□□ -0.37
LDHC-202ENST00000396215 TRIM17Q9Y577 477 aa12.77□□□□□ -0.37
LDHC-202ENST00000396215 DLL1O00548 723 aa12.76□□□□□ -0.37
LDHC-202ENST00000396215 EN2P19622 333 aaPredicted RBP12.76□□□□□ -0.37
LDHC-202ENST00000396215 LAMB1P07942 1786 aa12.76□□□□□ -0.37
LDHC-202ENST00000396215 USP17L8P0C7I0 530 aa12.75□□□□□ -0.37
LDHC-202ENST00000396215 LDLRAD1Q5T700 205 aa12.75□□□□□ -0.37
LDHC-202ENST00000396215 SPRYD7Q5W111 196 aa12.75□□□□□ -0.37
LDHC-202ENST00000396215 SP7Q8TDD2 431 aaPredicted RBP12.75□□□□□ -0.37
LDHC-202ENST00000396215 DLG5Q8TDM6 1919 aa12.75□□□□□ -0.37
LDHC-202ENST00000396215 THUMPD2Q9BTF0 503 aaKnown RBP12.75□□□□□ -0.37
LDHC-202ENST00000396215 PTPN12Q05209 780 aaKnown RBP12.74□□□□□ -0.37
LDHC-202ENST00000396215 PROSER3Q2NL68 480 aa12.74□□□□□ -0.37
LDHC-202ENST00000396215 COL4A1P02462 1669 aa12.73□□□□□ -0.37
LDHC-202ENST00000396215 MANSC4A6NHS7 340 aaPredicted RBP12.73□□□□□ -0.37
LDHC-202ENST00000396215 NF2P35240 595 aa12.73□□□□□ -0.37
LDHC-202ENST00000396215 MMP14P50281 582 aa12.73□□□□□ -0.37
LDHC-202ENST00000396215 RPS8P62241 208 aaKnown RBP12.73□□□□□ -0.37
LDHC-202ENST00000396215 COPS6Q7L5N1 327 aa12.73□□□□□ -0.37
LDHC-202ENST00000396215 IFNL1Q8IU54 200 aa12.73□□□□□ -0.37
LDHC-202ENST00000396215 ERO1AQ96HE7 468 aa12.73□□□□□ -0.37
LDHC-202ENST00000396215 LAMA3Q16787 3333 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms