RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 SLC52A2Q9HAB3 445 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 CDC42BPBQ9Y5S2 1711 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 TMEM132AQ24JP5 1023 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 CCDC83Q8IWF9 413 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 LARGE2Q8N3Y3 721 aa9.45□□□□□ -0.9
VPS41-202ENST00000310301 CCDC85AQ96PX6 553 aaPredicted RBP9.45□□□□□ -0.9
VPS41-202ENST00000310301 ATF5Q9Y2D1 282 aaPredicted RBP9.45□□□□□ -0.9
VPS41-202ENST00000310301 GSTO1P78417 241 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 GRM1Q13255 1194 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 USP6P35125 1406 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 BLMP54132 1417 aaPredicted RBP9.44□□□□□ -0.9
VPS41-202ENST00000310301 ASXL1Q8IXJ9 1541 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 LOC102724428A0A0B4J2F2 783 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 SIK1P57059 783 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 CCDC178Q5BJE1 867 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 ATP7BP35670 1465 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 PDIA4P13667 645 aaKnown RBP9.44□□□□□ -0.9
VPS41-202ENST00000310301 CKAP2LQ8IYA6 745 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 RSPH14Q9UHP6 348 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 MTHFSDQ2M296 383 aaKnown RBP9.44□□□□□ -0.9
VPS41-202ENST00000310301 GCOM1H8Y6P7 765 aaPredicted RBP9.44□□□□□ -0.9
VPS41-202ENST00000310301 MYZAPP0CAP1 466 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 UBE4AQ14139 1066 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 NUP133Q8WUM0 1156 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 GJA3Q9Y6H8 435 aa9.44□□□□□ -0.9
VPS41-202ENST00000310301 SPATA31E1Q6ZUB1 1445 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 CDKL5O76039 1030 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 LDHAL6AQ6ZMR3 332 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 PLCD3Q8N3E9 789 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 RBM27Q9P2N5 1060 aaKnown RBP9.43□□□□□ -0.9
VPS41-202ENST00000310301 IVLP07476 585 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 GSDMDP57764 484 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 CCDC184Q52MB2 194 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 ZNF790Q6PG37 636 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 AATKQ6ZMQ8 1374 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 BAG3O95817 575 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 GIGYF2Q6Y7W6 1299 aaKnown RBP9.43□□□□□ -0.9
VPS41-202ENST00000310301 IL16Q14005 1332 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 PAFAH1B1P43034 410 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 TMC6Q7Z403 805 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 C2CD5Q86YS7 1000 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 SLC16A10Q8TF71 515 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 CCDC94Q9BW85 323 aaPredicted RBP9.43□□□□□ -0.9
VPS41-202ENST00000310301 IQGAP3Q86VI3 1631 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 H7C1D1 291 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 DNA2P51530 1060 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 ARHGEF6Q15052 776 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 CC2D2BQ6DHV5 1058 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 PAF1Q8N7H5 531 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 XAGE3Q8WTP9 111 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 CPLX3Q8WVH0 158 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 ZNF830Q96NB3 372 aaPredicted RBP9.43□□□□□ -0.9
VPS41-202ENST00000310301 SRRTQ9BXP5 876 aaKnown RBP9.43□□□□□ -0.9
VPS41-202ENST00000310301 SIL1Q9H173 461 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 ABCF2Q9UG63 623 aa9.43□□□□□ -0.9
VPS41-202ENST00000310301 ATP2C2O75185 946 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 PHKG2P15735 406 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 EN1Q05925 392 aaPredicted RBP9.42□□□□□ -0.9
VPS41-202ENST00000310301 MSL1Q68DK7 614 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 TESK2Q96S53 571 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 NSFL1CQ9UNZ2 370 aaKnown RBP9.42□□□□□ -0.9
VPS41-202ENST00000310301 DIP2AQ14689 1571 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 ERBB3P21860 1342 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 ADRA2BP18089 450 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 SPECC1Q5M775 1068 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 COPS6Q7L5N1 327 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 SCAND2PQ9GZW5 306 aaPredicted RBP9.42□□□□□ -0.9
VPS41-202ENST00000310301 WWC3Q9ULE0 1092 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 SH3TC1Q8TE82 1336 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 SSR1P43307 286 aaKnown RBP9.42□□□□□ -0.9
VPS41-202ENST00000310301 ZSCAN23Q3MJ62 389 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 KLHL10Q6JEL2 608 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 SRGAP3O43295 1099 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 SPECC1LQ69YQ0 1117 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 BARGINQ6ZT62 677 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 MICALL1Q8N3F8 863 aa9.42□□□□□ -0.9
VPS41-202ENST00000310301 ZNF526Q8TF50 670 aaPredicted RBP9.42□□□□□ -0.9
VPS41-202ENST00000310301 RNF17Q9BXT8 1623 aaKnown RBP9.42□□□□□ -0.9
VPS41-202ENST00000310301 SOS2Q07890 1332 aaPredicted RBP9.42□□□□□ -0.9
VPS41-202ENST00000310301 SSBP05455 408 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS41-202ENST00000310301 HLA-DOAP06340 250 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 ATP2B2Q01814 1243 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 NOLC1Q14978 699 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS41-202ENST00000310301 UVSSAQ2YD98 709 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 ALDH1L2Q3SY69 923 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 MAATS1Q7Z4T9 603 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 KRI1Q8N9T8 703 aaKnown RBP9.41□□□□□ -0.9
VPS41-202ENST00000310301 THUMPD2Q9BTF0 503 aaKnown RBP9.41□□□□□ -0.9
VPS41-202ENST00000310301 ZSWIM4Q9H7M6 989 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 REREQ9P2R6 1566 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 PTPRCP08575 1304 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 HOXB7P09629 217 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 LIG1P18858 919 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 KRT32Q14532 448 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 TTC31Q49AM3 519 aaPredicted RBP9.41□□□□□ -0.9
VPS41-202ENST00000310301 NUP88Q99567 741 aaPredicted RBP9.41□□□□□ -0.9
VPS41-202ENST00000310301 XRCC6P12956 609 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS41-202ENST00000310301 FBLN1P23142 703 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 HSPA4P34932 840 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 DPP8Q6V1X1 898 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms