RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 GOPCQ9HD26 462 aa21.69■■□□□ 1.06
SMPD3-201ENST00000219334 MCM9Q9NXL9 1143 aa21.69■■□□□ 1.06
SMPD3-201ENST00000219334 RBM17Q96I25 401 aaKnown RBP21.69■■□□□ 1.06
SMPD3-201ENST00000219334 PHACTR2O75167 634 aa21.69■■□□□ 1.06
SMPD3-201ENST00000219334 LDHBP07195 334 aaKnown RBP21.69■■□□□ 1.06
SMPD3-201ENST00000219334 NOP2P46087 812 aaKnown RBP21.69■■□□□ 1.06
SMPD3-201ENST00000219334 NCBP1Q09161 790 aaKnown RBP21.69■■□□□ 1.06
SMPD3-201ENST00000219334 SPDYE3A6NKU9 549 aa21.69■■□□□ 1.06
SMPD3-201ENST00000219334 PAG1Q9NWQ8 432 aa21.69■■□□□ 1.06
SMPD3-201ENST00000219334 RBM10P98175 930 aaKnown RBP21.69■■□□□ 1.06
SMPD3-201ENST00000219334 PLCD4Q9BRC7 762 aa21.69■■□□□ 1.06
SMPD3-201ENST00000219334 CALM1P0DP23 149 aa21.68■■□□□ 1.06
SMPD3-201ENST00000219334 CALM2P0DP24 149 aa21.68■■□□□ 1.06
SMPD3-201ENST00000219334 CALM3P0DP25 149 aa21.68■■□□□ 1.06
SMPD3-201ENST00000219334 KRT13P13646 458 aa21.68■■□□□ 1.06
SMPD3-201ENST00000219334 ACTN2P35609 894 aa21.68■■□□□ 1.06
SMPD3-201ENST00000219334 TCHPQ9BT92 498 aa21.68■■□□□ 1.06
SMPD3-201ENST00000219334 DUOX2Q9NRD8 1548 aa21.68■■□□□ 1.06
SMPD3-201ENST00000219334 HELBQ8NG08 1087 aaPredicted RBP21.68■■□□□ 1.06
SMPD3-201ENST00000219334 SYNCQ9H7C4 482 aa21.68■■□□□ 1.06
SMPD3-201ENST00000219334 MMRN2Q9H8L6 949 aa21.68■■□□□ 1.06
SMPD3-201ENST00000219334 STAT6P42226 847 aa21.67■■□□□ 1.06
SMPD3-201ENST00000219334 POLKQ9UBT6 870 aa21.67■■□□□ 1.06
SMPD3-201ENST00000219334 RBM8AQ9Y5S9 174 aaKnown RBP21.67■■□□□ 1.06
SMPD3-201ENST00000219334 ANKRD44Q8N8A2 993 aa21.67■■□□□ 1.06
SMPD3-201ENST00000219334 C8orf58Q8NAV2 365 aa21.67■■□□□ 1.06
SMPD3-201ENST00000219334 KCNA6P17658 529 aa21.67■■□□□ 1.06
SMPD3-201ENST00000219334 TMCO3Q6UWJ1 677 aa21.67■■□□□ 1.06
SMPD3-201ENST00000219334 NAA15Q9BXJ9 866 aaKnown RBP21.67■■□□□ 1.06
SMPD3-201ENST00000219334 ZRANB1Q9UGI0 708 aa21.67■■□□□ 1.06
SMPD3-201ENST00000219334 PDE1AP54750 535 aa21.66■■□□□ 1.06
SMPD3-201ENST00000219334 GSDMDP57764 484 aa21.66■■□□□ 1.06
SMPD3-201ENST00000219334 PRPF4BQ13523 1007 aaKnown RBP21.66■■□□□ 1.06
SMPD3-201ENST00000219334 GDPD2Q9HCC8 539 aa21.66■■□□□ 1.06
SMPD3-201ENST00000219334 SYKP43405 635 aa21.66■■□□□ 1.06
SMPD3-201ENST00000219334 CNBD1Q8NA66 436 aa21.66■■□□□ 1.06
SMPD3-201ENST00000219334 TBC1D5Q92609 795 aa21.66■■□□□ 1.06
SMPD3-201ENST00000219334 LRRC2Q9BYS8 371 aa21.66■■□□□ 1.06
SMPD3-201ENST00000219334 PABPN1LA6NDY0 278 aaKnown RBP21.66■■□□□ 1.06
SMPD3-201ENST00000219334 MAP2K1Q02750 393 aaPredicted RBP21.66■■□□□ 1.06
SMPD3-201ENST00000219334 RRP36Q96EU6 259 aaKnown RBP21.66■■□□□ 1.06
SMPD3-201ENST00000219334 GCOM1H8Y6P7 765 aaPredicted RBP21.66■■□□□ 1.06
SMPD3-201ENST00000219334 NEMFO60524 1076 aa21.66■■□□□ 1.06
SMPD3-201ENST00000219334 MYZAPP0CAP1 466 aa21.66■■□□□ 1.06
SMPD3-201ENST00000219334 CCNL1Q9UK58 526 aaPredicted RBP21.66■■□□□ 1.06
SMPD3-201ENST00000219334 ESPNB1AK53 854 aa21.65■■□□□ 1.06
SMPD3-201ENST00000219334 SPAG5Q96R06 1193 aa21.65■■□□□ 1.06
SMPD3-201ENST00000219334 MAP3K5Q99683 1374 aa21.65■■□□□ 1.06
SMPD3-201ENST00000219334 N4BP3O15049 544 aa21.65■■□□□ 1.06
SMPD3-201ENST00000219334 SDSP20132 328 aa21.65■■□□□ 1.06
SMPD3-201ENST00000219334 UQCRHLA0A096LP55 91 aa21.65■■□□□ 1.06
SMPD3-201ENST00000219334 UQCRHP07919 91 aa21.65■■□□□ 1.06
SMPD3-201ENST00000219334 CALML3P27482 149 aa21.65■■□□□ 1.06
SMPD3-201ENST00000219334 HDAC1Q13547 482 aaPredicted RBP21.65■■□□□ 1.06
SMPD3-201ENST00000219334 TMC6Q7Z403 805 aa21.65■■□□□ 1.06
SMPD3-201ENST00000219334 TBC1D2Q9BYX2 928 aa21.65■■□□□ 1.06
SMPD3-201ENST00000219334 RRAGBQ5VZM2 374 aa21.64■■□□□ 1.06
SMPD3-201ENST00000219334 PA2G4Q9UQ80 394 aaKnown RBP21.64■■□□□ 1.06
SMPD3-201ENST00000219334 TTC6Q86TZ1 520 aa21.64■■□□□ 1.05
SMPD3-201ENST00000219334 IMPG2Q9BZV3 1241 aa21.64■■□□□ 1.05
SMPD3-201ENST00000219334 ATP10BO94823 1461 aa21.64■■□□□ 1.05
SMPD3-201ENST00000219334 RTL9Q8NET4 1388 aa21.64■■□□□ 1.05
SMPD3-201ENST00000219334 NUCB1Q02818 461 aa21.64■■□□□ 1.05
SMPD3-201ENST00000219334 MRPL50Q8N5N7 158 aaKnown RBP21.64■■□□□ 1.05
SMPD3-201ENST00000219334 IP6K1Q92551 441 aa21.64■■□□□ 1.05
SMPD3-201ENST00000219334 TBX22Q9Y458 520 aa21.64■■□□□ 1.05
SMPD3-201ENST00000219334 RNF113AO15541 343 aaKnown RBP21.64■■□□□ 1.05
SMPD3-201ENST00000219334 ISM2Q6H9L7 571 aa21.64■■□□□ 1.05
SMPD3-201ENST00000219334 NPATQ14207 1427 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 CAVIN2O95810 425 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 MAGEB6Q8N7X4 407 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 NECAB1Q8N987 351 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 MIGA1Q8NAN2 632 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 TNPO1Q92973 898 aaKnown RBP21.63■■□□□ 1.05
SMPD3-201ENST00000219334 KCNG4Q8TDN1 519 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 ZNF165P49910 485 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 SPECC1Q5M775 1068 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 ZSCAN30Q86W11 494 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 EYA1Q99502 592 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 TRPM2O94759 1503 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 IFI16Q16666 785 aaKnown RBP21.63■■□□□ 1.05
SMPD3-201ENST00000219334 SKAP1Q86WV1 359 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 PUS7Q96PZ0 661 aaKnown RBP21.63■■□□□ 1.05
SMPD3-201ENST00000219334 SH2D4AQ9H788 454 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 GJA3Q9Y6H8 435 aa21.63■■□□□ 1.05
SMPD3-201ENST00000219334 THOC2Q8NI27 1593 aaKnown RBP21.63■■□□□ 1.05
SMPD3-201ENST00000219334 RNMTO43148 476 aaKnown RBP21.62■■□□□ 1.05
SMPD3-201ENST00000219334 STAMBPO95630 424 aa21.62■■□□□ 1.05
SMPD3-201ENST00000219334 AKR1B10O60218 316 aa21.62■■□□□ 1.05
SMPD3-201ENST00000219334 CALRP27797 417 aaKnown RBP21.62■■□□□ 1.05
SMPD3-201ENST00000219334 AFMP43652 599 aa21.62■■□□□ 1.05
SMPD3-201ENST00000219334 UBE2HP62256 183 aa21.62■■□□□ 1.05
SMPD3-201ENST00000219334 HLTFQ14527 1009 aaKnown RBP eCLIP21.62■■□□□ 1.05
SMPD3-201ENST00000219334 CWF19L2Q2TBE0 894 aaKnown RBP21.62■■□□□ 1.05
SMPD3-201ENST00000219334 TCEANC2Q96MN5 208 aa21.62■■□□□ 1.05
SMPD3-201ENST00000219334 PLVAPQ9BX97 442 aa21.62■■□□□ 1.05
SMPD3-201ENST00000219334 BIN2Q9UBW5 565 aaPredicted RBP21.62■■□□□ 1.05
SMPD3-201ENST00000219334 ZMYM3Q14202 1370 aa21.61■■□□□ 1.05
SMPD3-201ENST00000219334 PARP10Q53GL7 1025 aa21.61■■□□□ 1.05
SMPD3-201ENST00000219334 Q6ZUG5 572 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms