RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 KCTD21Q4G0X4 260 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 C4orf17Q53FE4 359 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 KLHL22Q53GT1 634 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 HIST2H3PS2Q5TEC6 136 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 LCN1P1Q5VSP4 162 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 VWA1Q6PCB0 445 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 HIST2H3AQ71DI3 136 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 BCDIN3DQ7Z5W3 292 aaKnown RBP8.43□□□□□ -1.06
LIMA1-211ENST00000552338 GLB1L2Q8IW92 636 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 CCDC36Q8IYA8 594 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF100Q8IYN0 542 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 GPR137CQ8N3F9 429 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 SYT14Q8NB59 555 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 BBS1Q8NFJ9 593 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 GGHQ92820 318 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 NABP1Q96AH0 204 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 TSSK2Q96PF2 358 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 FOXB1Q99853 325 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF649Q9BS31 505 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 ULBP2Q9BZM5 246 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 NELFAQ9H3P2 528 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF696Q9H7X3 374 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 SIAEQ9HAT2 523 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 CRLF2Q9HC73 371 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 SRA1Q9HD15 236 aaKnown RBP8.43□□□□□ -1.06
LIMA1-211ENST00000552338 POLE4Q9NR33 117 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 ELOVL5Q9NYP7 299 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 CLEC4AQ9UMR7 237 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 TPRKBQ9Y3C4 175 aa8.43□□□□□ -1.06
LIMA1-211ENST00000552338 TRGV8A0A0C4DH27 118 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 EFCAB10A6NFE3 127 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 TRIM64CA6NLI5 447 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF587BE7ETH6 402 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 H7C1C5 153 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 TFP02787 698 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ITGA5P08648 1049 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 OR2T7P0C7T2 308 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 PSMB1P20618 241 aaKnown RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 DCKP27707 260 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF84P51523 738 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 CHN2P52757 468 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 LCN6P62502 163 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ADORA2A-AS1P86434 159 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ROR2Q01974 943 aaKnown RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF91Q05481 1191 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 FMODQ06828 376 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 MRPL49Q13405 166 aaKnown RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 SMN1Q16637 294 aaKnown RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 SLC25A35Q3KQZ1 300 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF474Q6S9Z5 364 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 SHFQ7M4L6 423 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 SSX8Q7RTT4 187 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 SLC16A9Q7RTY1 509 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 DPPA2Q7Z7J5 298 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 GCNT2Q8N0V5 402 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 C17orf78Q8N4C9 275 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 OR9Q1Q8NGQ5 310 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 OR2T27Q8NH04 317 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 LILRB4Q8NHJ6 448 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ASB5Q8WWX0 329 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF775Q96BV0 537 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ZNF837Q96EG3 531 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 CDCA4Q9BXL8 241 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 HDHD5Q9BXW7 423 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 YIPF3Q9GZM5 350 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 OR51V1Q9H2C8 321 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 MED20Q9H944 212 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 ADGRL4Q9HBW9 690 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 CCNB1IP1Q9NPC3 277 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 INPP5EQ9NRR6 644 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 TMEM38BQ9NVV0 291 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 MRPL22Q9NWU5 206 aaKnown RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 SCN3BQ9NY72 215 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 TAS2R16Q9NYV7 291 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 DNAJC27Q9NZQ0 273 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 UPB1Q9UBR1 384 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 AASSQ9UDR5 926 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 CYB5R1Q9UHQ9 305 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 PRSS50Q9UI38 385 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 BLOC1S6Q9UL45 172 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 PROCRQ9UNN8 238 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 OSGIN2Q9Y236 505 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 COA3Q9Y2R0 106 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 CACNA1CQ13936 2221 aa8.42□□□□□ -1.06
LIMA1-211ENST00000552338 DIDO1Q9BTC0 2240 aaKnown RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 RP1L1Q8IWN7 2480 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-211ENST00000552338 NBASA2RRP1 2371 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 ARPC4-TTLL3A0A0A6YYG9 625 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 WIPF3A6NGB9 483 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 CCL21O00585 134 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 DVL2O14641 736 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 TNFAIP8O95379 198 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 SCG5P05408 212 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 GYPBP06028 91 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 CDK1P06493 297 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 CST2P09228 141 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 ALOX5APP20292 161 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 MSR1P21757 451 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 IGHV1-2P23083 117 aa8.41□□□□□ -1.06
LIMA1-211ENST00000552338 CHRNB4P30926 498 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms