RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PRKACAP17612 351 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 PTBP1P26599 531 aaKnown RBP eCLIP11.59□□□□□ -0.55
USP53-209ENST00000514665 AFF3P51826 1226 aaKnown RBP11.59□□□□□ -0.55
USP53-209ENST00000514665 GABREP78334 506 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 CNN3Q15417 329 aaKnown RBP11.59□□□□□ -0.55
USP53-209ENST00000514665 PRTGQ2VWP7 1150 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 NKAIN1Q4KMZ8 207 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 DMRTC1Q5HYR2 192 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 C12orf73Q69YU5 71 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 H1FNTQ75WM6 255 aaPredicted RBP11.59□□□□□ -0.55
USP53-209ENST00000514665 ADGRE4PQ86SQ3 457 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 MFSD4AQ8N468 514 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 ELSPBP1Q96BH3 223 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 MRGPRX3Q96LB0 322 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 TAS2R4Q9NYW5 299 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 LRFN1Q9P244 771 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 KLHL13Q9P2N7 655 aa11.59□□□□□ -0.55
USP53-209ENST00000514665 MCTS1Q9ULC4 181 aaKnown RBP11.59□□□□□ -0.55
USP53-209ENST00000514665 PRAMEF27A3QJZ7 478 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 K7EPK0 472 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 SULT1B1O43704 296 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 RPS27AP62979 156 aaKnown RBP11.58□□□□□ -0.56
USP53-209ENST00000514665 UBA52P62987 128 aaKnown RBP11.58□□□□□ -0.56
USP53-209ENST00000514665 EBPQ15125 230 aaKnown RBP11.58□□□□□ -0.56
USP53-209ENST00000514665 GLIPR1L1Q6UWM5 242 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 FAM71E2Q8N5Q1 922 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 ARIH2OSQ8N7S6 290 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 FAM71CQ8NEG0 241 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 DOK1Q99704 481 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 ISYNA1Q9NPH2 558 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 LAMB2P55268 1798 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 LOC107986453A0A1B0GWG9 222 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 LIMS3P0CW19 117 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 LIMS4P0CW20 117 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 HOXB9P17482 250 aaPredicted RBP11.58□□□□□ -0.56
USP53-209ENST00000514665 NME2P22392 152 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 SDHAP31040 664 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 EIF2S3P41091 472 aaKnown RBP11.58□□□□□ -0.56
USP53-209ENST00000514665 FBXW12Q6X9E4 464 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 COMTD1Q86VU5 262 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 ZFAND1Q8TCF1 268 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 DCBLD2Q96PD2 775 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 SLC25A21Q9BQT8 299 aaPredicted RBP11.58□□□□□ -0.56
USP53-209ENST00000514665 ZNF576Q9H609 170 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 MED29Q9NX70 200 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 IL20Q9NYY1 176 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 MMP17Q9ULZ9 603 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 CCL27Q9Y4X3 112 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 EP400Q96L91 3159 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 LOC102725191A0A1B0GVB3 256 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 MRPL33O75394 65 aaKnown RBP11.58□□□□□ -0.56
USP53-209ENST00000514665 DDAH2O95865 285 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 RAC2P15153 192 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 PCMT1P22061 227 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 S100PP25815 95 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 RAD52P43351 418 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 ACSM1Q08AH1 577 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 HNF4GQ14541 408 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 C14orf28Q4W4Y0 310 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 FCRL6Q6DN72 434 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 BATF2Q8N1L9 274 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 OR10R2Q8NGX6 335 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 RPP25Q9BUL9 199 aaKnown RBP11.58□□□□□ -0.56
USP53-209ENST00000514665 PTDSS2Q9BVG9 487 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 UNKLQ9H9P5 680 aaKnown RBP11.58□□□□□ -0.56
USP53-209ENST00000514665 C20orf141Q9NUB4 165 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 KLK11Q9UBX7 282 aa11.58□□□□□ -0.56
USP53-209ENST00000514665 DOCK1Q14185 1865 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 A0A1B0GX78 115 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 SSX4O60224 188 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 ALX3O95076 343 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 NSA2O95478 260 aaKnown RBP11.57□□□□□ -0.56
USP53-209ENST00000514665 IFNA1P01562 189 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 CD27P26842 260 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 DCTDP32321 178 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 C5orf46Q6UWT4 87 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 SYS1Q8N2H4 156 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 OR2A14Q96R47 310 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 CCNL2Q96S94 520 aaPredicted RBP11.57□□□□□ -0.56
USP53-209ENST00000514665 METTL9Q9H1A3 318 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 KCNG2Q9UJ96 466 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 XIRP1Q702N8 1843 aaKnown RBP11.57□□□□□ -0.56
USP53-209ENST00000514665 A0A1W2PNR3 127 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 IDSB3KWA1 339 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 TOR1AO14656 332 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 SOD1P00441 154 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 TK1P04183 234 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 PTHLHP12272 177 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 APLNRP35414 380 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 TAS2R46P59540 309 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 AKR1C1Q04828 323 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 AADACL4Q5VUY2 407 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 PRSS41Q7RTY9 318 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 SLC51BQ86UW2 128 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 OR4C3Q8NH37 302 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 OR5B12Q96R08 314 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 RNF32Q9H0A6 362 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 ASH2LQ9UBL3 628 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 CHRNA9Q9UGM1 479 aa11.57□□□□□ -0.56
USP53-209ENST00000514665 ANKRD30BLA7E2S9 258 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms