RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 LIMS3P0CW19 117 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 LIMS4P0CW20 117 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 P2RX1P51575 399 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 ZNF226Q9NYT6 803 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 A0A1B0GW64 132 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PRAMEF27A3QJZ7 478 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PRAMEF25A6NGN4 478 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PRAMEF4O60810 478 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 OR10A3P58181 314 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PRAMEF9Q5VWM5 478 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 SLC25A44Q96H78 314 aaPredicted RBP4.52□□□□□ -1.69
PCDH9-201ENST00000377861 NAT1P18440 290 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 OC90Q02509 493 aaPredicted RBP4.52□□□□□ -1.69
PCDH9-201ENST00000377861 GDF7Q7Z4P5 450 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 OR14A2Q96R54 314 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 POLDIP2Q9Y2S7 368 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 J3QR89 54 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 CDC123O75794 336 aaPredicted RBP4.52□□□□□ -1.69
PCDH9-201ENST00000377861 CD27P26842 260 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PYCR3Q53H96 274 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 LYG2Q86SG7 212 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 UCP3P55916 312 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 OR10Z1Q8NGY1 313 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 TSLPQ969D9 159 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 ST6GAL2Q96JF0 529 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 HTR4Q13639 388 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 IL13RA2Q14627 380 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 GLYATL3Q5SZD4 288 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 ACBD4Q8NC06 268 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 DPH1Q9BZG8 443 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 ZNF286AQ9HBT8 521 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 SYNGR4O95473 234 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PARP11Q9NR21 331 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 MYO5BQ9ULV0 1848 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 SMCO3A2RU48 225 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 OIP5O43482 229 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PGAM2P15259 253 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 WNT3P56703 355 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PMS2P11Q13670 270 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 SGCAQ16586 387 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 TBPL2Q6SJ96 375 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 OR10G4Q8NGN3 311 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 CCDC74AQ96AQ1 378 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 EFNB1P98172 346 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 MTFR2Q6P444 385 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 REV1Q9UBZ9 1251 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PITPNC1Q9UKF7 332 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 FAM90A26D6RGX4 464 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 P2RX4Q99571 388 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 CLRN1P58418 232 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 ZNF626Q68DY1 528 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 GALNTL5Q7Z4T8 443 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 LURAP1LQ8IV03 231 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 UEVLDQ8IX04 471 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 TMED7Q9Y3B3 224 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 A0A1W2PRU2 124 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PPP5D1E7EU14 171 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 SSX5O60225 188 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 OR13C3Q8NGS6 347 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 CPT1CQ8TCG5 803 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 C22orf15Q8WYQ4 148 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 IL33O95760 270 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 POLR2IP36954 125 aaKnown RBP4.52□□□□□ -1.69
PCDH9-201ENST00000377861 DEFA6Q01524 100 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 LRRC3BQ96PB8 259 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 SPOCK3Q9BQ16 436 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PRDM7Q9NQW5 492 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 SEC14L6B5MCN3 397 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 CHRM4P08173 479 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PGA4P0DJD7 388 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 PGA5P0DJD9 388 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 RAB13P51153 203 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 ZNF695Q8IW36 515 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 HLA-AP01891 365 aaKnown RBP4.52□□□□□ -1.69
PCDH9-201ENST00000377861 FCGR2AP12318 317 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 FUT3P21217 361 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 RPS25P62851 125 aaKnown RBP4.52□□□□□ -1.69
PCDH9-201ENST00000377861 CDKN3Q16667 212 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 ETFRF1Q6IPR1 90 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 LURAP1Q96LR2 239 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 OXGR1Q96P68 337 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 C20orf85Q9H1P6 137 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 KCNK12Q9HB15 430 aa4.52□□□□□ -1.69
PCDH9-201ENST00000377861 A0A1B0GU03 582 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 CTSDP07339 412 aaPredicted RBP4.51□□□□□ -1.69
PCDH9-201ENST00000377861 HOXC12P31275 282 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 BTNL3Q6UXE8 466 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 OPALINQ96PE5 141 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 LINC01549A6NIU2 74 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 PSMB3P49720 205 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 DEFB134Q4QY38 66 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 FAM182BQ5T319 152 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 ADIPOR2Q86V24 386 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 FRG2CA6NGY1 282 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 E7EQ34 232 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 DPP4P27487 766 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 KIR2DL3P43628 341 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 LINC01559Q495D7 138 aa4.51□□□□□ -1.69
PCDH9-201ENST00000377861 CISD2Q8N5K1 135 aaKnown RBP4.51□□□□□ -1.69
PCDH9-201ENST00000377861 ZNF8P17098 575 aaPredicted RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms