RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ARR3P36575 388 aa16.25■□□□□ 0.19
USP39-209ENST00000458268 GIPRP48546 466 aa16.25■□□□□ 0.19
USP39-209ENST00000458268 SLC9A3P48764 834 aa16.25■□□□□ 0.19
USP39-209ENST00000458268 LRFN4Q6PJG9 635 aa16.25■□□□□ 0.19
USP39-209ENST00000458268 MCHR2Q969V1 340 aa16.25■□□□□ 0.19
USP39-209ENST00000458268 CCDC124Q96CT7 223 aaKnown RBP16.25■□□□□ 0.19
USP39-209ENST00000458268 MS4A3Q96HJ5 214 aa16.25■□□□□ 0.19
USP39-209ENST00000458268 C7orf34Q96L11 122 aa16.25■□□□□ 0.19
USP39-209ENST00000458268 CBLN4Q9NTU7 201 aa16.25■□□□□ 0.19
USP39-209ENST00000458268 ZNF346Q9UL40 294 aaKnown RBP16.25■□□□□ 0.19
USP39-209ENST00000458268 H7C1C5 153 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 H7C1Q1 480 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 CDC42EP2O14613 210 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 GADD45GO95257 159 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 FARS2O95363 451 aaKnown RBP16.24■□□□□ 0.19
USP39-209ENST00000458268 CD8AP01732 235 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 LCN6P62502 163 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 RAB1AP62820 205 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 ERVK-25P63136 954 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 KRT80Q6KB66 452 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 SKA3Q8IX90 412 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 RNF113BQ8IZP6 322 aaKnown RBP16.24■□□□□ 0.19
USP39-209ENST00000458268 LRRC18Q8N456 261 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 SLC22A24Q8N4F4 322 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 CLDN22Q8N7P3 220 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 OR4K5Q8NGD3 323 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 LIPHQ8WWY8 451 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 IGFBPL1Q8WX77 278 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 HDAC2Q92769 488 aaKnown RBP16.24■□□□□ 0.19
USP39-209ENST00000458268 BOD1Q96IK1 185 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 TSPAN32Q96QS1 320 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 KATNB1Q9BVA0 655 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 TXNIPQ9H3M7 391 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 KRCC1Q9NPI7 259 aaPredicted RBP16.24■□□□□ 0.19
USP39-209ENST00000458268 FAM53CQ9NYF3 392 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 IL20RAQ9UHF4 553 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 TMEM5Q9Y2B1 443 aa16.24■□□□□ 0.19
USP39-209ENST00000458268 FLNAP21333 2647 aaKnown RBP16.23■□□□□ 0.19
USP39-209ENST00000458268 UBL3O95164 117 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 RPL27P61353 136 aaKnown RBP16.23■□□□□ 0.19
USP39-209ENST00000458268 RAB39AQ14964 217 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 SEC23BQ15437 767 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 SGCAQ16586 387 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 C1QTNF12Q5T7M4 302 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 DTX2Q86UW9 622 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 ZDHHC21Q8IVQ6 265 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 CCDC36Q8IYA8 594 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 CLPTM1LQ96KA5 538 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 NDEL1Q9GZM8 345 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 ANKRD19PQ9H560 264 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 MOV10Q9HCE1 1003 aaKnown RBP16.23■□□□□ 0.19
USP39-209ENST00000458268 ZNF701Q9NV72 531 aaPredicted RBP16.23■□□□□ 0.19
USP39-209ENST00000458268 TMEM38BQ9NVV0 291 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 STX18Q9P2W9 335 aaKnown RBP16.23■□□□□ 0.19
USP39-209ENST00000458268 CRNNQ9UBG3 495 aaPredicted RBP16.23■□□□□ 0.19
USP39-209ENST00000458268 ADAM18Q9Y3Q7 739 aa16.23■□□□□ 0.19
USP39-209ENST00000458268 IGHV2OR16-5A0A0B4J2B6 119 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 A0A1W2PPL8 197 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 A0A1W2PRQ8 180 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 HTR3EA5X5Y0 456 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 IGKV3-15P01624 115 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 IGLV1-44P01699 117 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 OR8G3PP0DMU2 310 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 T-ENOLP0DO92 83 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 RRM2P31350 389 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 APOBEC3AP31941 199 aaPredicted RBP16.22■□□□□ 0.19
USP39-209ENST00000458268 CDAP32320 146 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 CHRNB3Q05901 458 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 SNTB2Q13425 540 aaKnown RBP16.22■□□□□ 0.19
USP39-209ENST00000458268 DGCR6Q14129 220 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 ZBED5Q49AG3 693 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 ARMC4Q5T2S8 1044 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 ZNF544Q6NX49 715 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 Q71RC1 249 aaPredicted RBP16.22■□□□□ 0.19
USP39-209ENST00000458268 SLC16A14Q7RTX9 510 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 PIWIL3Q7Z3Z3 882 aaKnown RBP16.22■□□□□ 0.19
USP39-209ENST00000458268 FGFBP3Q8TAT2 258 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 RSRC1Q96IZ7 334 aaKnown RBP16.22■□□□□ 0.19
USP39-209ENST00000458268 GSX1Q9H4S2 264 aaPredicted RBP16.22■□□□□ 0.19
USP39-209ENST00000458268 RERGLQ9H628 205 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 CA10Q9NS85 328 aa16.22■□□□□ 0.19
USP39-209ENST00000458268 ACANP16112 2415 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 UNC119BA6NIH7 251 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 OVOL3O00110 214 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 SSX4O60224 188 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 OR10H3O60404 316 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 TMCC2O75069 709 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 UBOX5O94941 541 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 STAMBPO95630 424 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 IGHV4-39P01824 125 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 PAX7P23759 505 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 NUDT6P53370 316 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 SMIM11AP58511 58 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 FXNQ16595 210 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 CLEC12BQ2HXU8 276 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 TMEM53Q6P2H8 277 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 TMPRSS11FQ6ZWK6 438 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 TRPM8Q7Z2W7 1104 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 DHFR2Q86XF0 187 aa16.21■□□□□ 0.19
USP39-209ENST00000458268 CIARTQ8N365 385 aaPredicted RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms