RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ST3GAL3Q11203 375 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 RAB39AQ14964 217 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 C6orf52Q5T4I8 152 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 HIPK1Q86Z02 1210 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 FGFBP3Q8TAT2 258 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 ASB10Q8WXI3 467 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 LZICQ8WZA0 190 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 PRRC1Q96M27 445 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 SEPHS2Q99611 448 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 INIPQ9NRY2 104 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 A4GNTQ9UNA3 340 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 CMAHPQ9Y471 501 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 SPEF1Q9Y4P9 236 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 GLRXP35754 106 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 NR4A2P43354 598 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 CLRN1P58418 232 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 LSM11P83369 360 aaKnown RBP eCLIP18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 LIPEQ05469 1076 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 MSMPQ1L6U9 139 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 HDDC2Q7Z4H3 204 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 ZNF584Q8IVC4 421 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 CDK20Q8IZL9 346 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 NOXO1Q8NFA2 376 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 NEU4Q8WWR8 484 aaPredicted RBP18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 MCHR2Q969V1 340 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 MRPL24Q96A35 216 aaKnown RBP18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 FOXN4Q96NZ1 517 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 ZNF347Q96SE7 839 aa18.72■□□□□ 0.59
CCDC28B-201ENST00000373602 HTR3EA5X5Y0 456 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 MCIDASD6RGH6 385 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 TRMUO75648 421 aaKnown RBP18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 FARS2O95363 451 aaKnown RBP18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 SERPINA5P05154 406 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 IGFBP1P08833 259 aaPredicted RBP18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 ACADSP16219 412 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 EVX1P49640 407 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 DAP3P51398 398 aaKnown RBP18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 ZNF133P52736 654 aaPredicted RBP18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 NRN1LQ496H8 165 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 CYB5R2Q6BCY4 276 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 C8orf82Q6P1X6 216 aaPredicted RBP18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 DPPA2Q7Z7J5 298 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 ZCCHC24Q8N2G6 241 aaKnown RBP18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 MOSPD2Q8NHP6 518 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 SH3GL3Q99963 347 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 HOPXQ9BPY8 73 aaPredicted RBP18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 DYNLRB1Q9NP97 96 aa18.71■□□□□ 0.59
CCDC28B-201ENST00000373602 SH3PXD2BA1X283 911 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 NPIPB13A6NJU9 1138 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 NPIPB4C9JG80 1138 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 CXCR6O00574 342 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 NME4O00746 187 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 PIP5K1CO60331 668 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 ERCC1P07992 297 aaPredicted RBP18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 IGHV4-31P0DP07 118 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 IFNA8P32881 189 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 SLC7A2P52569 658 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 GALK2Q01415 458 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 GGTLC2Q14390 218 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 CARTPTQ16568 116 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 FXNQ16595 210 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 ARMC4Q5T2S8 1044 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 VTCN1Q7Z7D3 282 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 TREML1Q86YW5 311 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 SYT14Q8NB59 555 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 OR4K5Q8NGD3 323 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 MRPL37Q9BZE1 423 aaKnown RBP18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 EFCAB1Q9HAE3 211 aa18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 STX18Q9P2W9 335 aaKnown RBP18.7■□□□□ 0.58
CCDC28B-201ENST00000373602 STAMBPO95630 424 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 IFNW1P05000 195 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 ADRA2AP08913 450 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 IFI30P13284 250 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 FUT4P22083 530 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 LSP1P33241 339 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 ZNF84P51523 738 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 RPS23P62266 143 aaKnown RBP18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 MYBPC1Q00872 1141 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 LAPTM4AQ15012 233 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 C10orf128Q5T292 105 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 GKAP1Q5VSY0 366 aaPredicted RBP18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 TMEM53Q6P2H8 277 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 HACD2Q6Y1H2 254 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 CBLL1Q75N03 491 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 OFCC1Q8IZS5 231 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 ZNF540Q8NDQ6 660 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 BPIFA2Q96DR5 249 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 SLC7A8Q9UHI5 535 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 HIF3AQ9Y2N7 669 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 SNX13Q9Y5W8 968 aa18.69■□□□□ 0.58
CCDC28B-201ENST00000373602 IGHV4-61A0A0C4DH41 118 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 SYNGR3O43761 229 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 MGRN1O60291 552 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 DAOP14920 347 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 YAP1P46937 504 aaKnown RBP18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 GSK3BP49841 420 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 GZMKP49863 264 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 SLC36A2Q495M3 483 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 SLC16A14Q7RTX9 510 aa18.68■□□□□ 0.58
CCDC28B-201ENST00000373602 HDAC2Q92769 488 aaKnown RBP18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms