RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 RPL4P36578 427 aaKnown RBP11.25□□□□□ -0.61
UPF1-208ENST00000600012 STARP49675 285 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 GFRA1P56159 465 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 OR2B6P58173 313 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 ISL1P61371 349 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 RAC1P63000 192 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 MYBPC1Q00872 1141 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 RPL18Q07020 188 aaKnown RBP11.25□□□□□ -0.61
UPF1-208ENST00000600012 MAD2L1BPQ15013 274 aaPredicted RBP11.25□□□□□ -0.61
UPF1-208ENST00000600012 CASP12Q6UXS9 341 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 HIST3H2AQ7L7L0 130 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 UBQLNLQ8IYU4 475 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 GCNT2Q8N0V5 402 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 DEPDC4Q8N2C3 294 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 ZNF786Q8N393 782 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 LRRC75AQ8NAA5 344 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 OR2T33Q8NG76 320 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 OR5J2Q8NH18 312 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 APH1BQ8WW43 257 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 HIST1H2ACQ93077 130 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 KLHL15Q96M94 604 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 SMR3AQ99954 134 aa11.25□□□□□ -0.61
UPF1-208ENST00000600012 FN1P02751 2386 aaKnown RBP11.25□□□□□ -0.61
UPF1-208ENST00000600012 A0A0J9YW62 118 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 A8MXE2 369 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 SULT2B1O00204 365 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 TNFSF11O14788 317 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 PRKYO43930 277 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 SERPINI2O75830 405 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 AKR7A3O95154 331 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 SLC2A10O95528 541 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 F13BP05160 661 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 TSPAN19P0C672 248 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 ADORA3P0DMS8 318 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 ZNF708P17019 499 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 FMO3P31513 532 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 GRK5P34947 590 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 PCYT1AP49585 367 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 CLK1P49759 484 aaKnown RBP11.24□□□□□ -0.61
UPF1-208ENST00000600012 DIO1P49895 249 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 LHX2P50458 406 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 RPS6KA3P51812 740 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 CLDN20P56880 219 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 PMS2P3Q13401 168 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 SNAPC1Q16533 368 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 SGCBQ16585 318 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 ALG10Q5BKT4 473 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 SLC35F1Q5T1Q4 408 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 LAIR2Q6ISS4 152 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 CLEC9AQ6UXN8 241 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 PTCHD4Q6ZW05 846 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 Q71RC1 249 aaPredicted RBP11.24□□□□□ -0.61
UPF1-208ENST00000600012 GGNQ86UU5 652 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 CXorf67Q86X51 503 aaPredicted RBP11.24□□□□□ -0.61
UPF1-208ENST00000600012 CCDC103Q8IW40 242 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 TCEANCQ8N8B7 351 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 FBLIM1Q8WUP2 373 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 ERMAPQ96PL5 475 aaPredicted RBP11.24□□□□□ -0.61
UPF1-208ENST00000600012 IL4I1Q96RQ9 567 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 MRPL39Q9NYK5 338 aaKnown RBP11.24□□□□□ -0.61
UPF1-208ENST00000600012 TAS2R5Q9NYW4 299 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 HDGFL3Q9Y3E1 203 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 ADAM18Q9Y3Q7 739 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 HSPE1-MOB4S4R3N1 261 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 DSCAMO60469 2012 aa11.24□□□□□ -0.61
UPF1-208ENST00000600012 VPS13CQ709C8 3753 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 A0A1W2PNV4 684 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 PLPP3O14495 311 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 EIF1AYO14602 144 aaKnown RBP11.23□□□□□ -0.61
UPF1-208ENST00000600012 MSTNO14793 375 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 SURF4O15260 269 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 FZD7O75084 574 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 WBP4O75554 376 aaKnown RBP11.23□□□□□ -0.61
UPF1-208ENST00000600012 TNFSF13O75888 250 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 SMNDC1O75940 238 aaKnown RBP eCLIP11.23□□□□□ -0.61
UPF1-208ENST00000600012 PMS2P2O95744 297 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 PLGP00747 810 aaPredicted RBP11.23□□□□□ -0.61
UPF1-208ENST00000600012 CRHP06850 196 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 HEXAP06865 529 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 GABRB1P18505 474 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 FKBP2P26885 142 aaKnown RBP11.23□□□□□ -0.61
UPF1-208ENST00000600012 CHN2P52757 468 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 SUCLG1P53597 346 aaKnown RBP11.23□□□□□ -0.61
UPF1-208ENST00000600012 CLDN18P56856 261 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 CTXN1P60606 82 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 PRPS1P60891 318 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 ERVK-25P63136 954 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 CDK5R2Q13319 367 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 TOP3AQ13472 1001 aaPredicted RBP11.23□□□□□ -0.61
UPF1-208ENST00000600012 MFSD13AQ14CX5 517 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 SMN1Q16637 294 aaKnown RBP11.23□□□□□ -0.61
UPF1-208ENST00000600012 ANKDD1AQ495B1 522 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 Q5PR19 223 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 PLXDC2Q6UX71 529 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 DPY19L2P2Q6ZN68 376 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 TMPPEQ6ZT21 453 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 BCDIN3DQ7Z5W3 292 aaKnown RBP11.23□□□□□ -0.61
UPF1-208ENST00000600012 LRRC75A-AS1Q8N1F1 130 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 SLC43A2Q8N370 569 aa11.23□□□□□ -0.61
UPF1-208ENST00000600012 KDM8Q8N371 416 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms