RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 V9GYY5 206 aaPredicted RBP6.35□□□□□ -1.39
USP54-208ENST00000461520 TMEM72A0PK05 275 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 CFAP73A6NFT4 308 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 CCT8L1PA6NM43 557 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 LINC01548A6NM66 108 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 TRPC5OSA6NMA1 111 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 SLCO1B7G3V0H7 640 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 PDLIM1O00151 329 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 RFXANKO14593 260 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 AP3D1O14617 1153 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 CRLF1O75462 422 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 IGHV3-9P01782 118 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 IGHV4-39P01824 125 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 C1QCP02747 245 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 IL6P05231 212 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 DBIP07108 87 aaKnown RBP6.34□□□□□ -1.39
USP54-208ENST00000461520 CHRM4P08173 479 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 ITGA5P08648 1049 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 NR2F1P10589 423 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 IDO1P14902 403 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 CCNA2P20248 432 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 EPHA3P29320 983 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 TACR3P29371 465 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 IL12AP29459 219 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 TTKP33981 857 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 ACVR1BP36896 505 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 CDKN2CP42773 168 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 SLC18A1P54219 525 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 NME5P56597 212 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 DMTNQ08495 405 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 EPS8Q12929 822 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 SLC17A1Q14916 467 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 GSTA3Q16772 222 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 ZSWIM7Q19AV6 140 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 MRPL2Q5T653 305 aaKnown RBP6.34□□□□□ -1.39
USP54-208ENST00000461520 HHATQ5VTY9 493 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 SUMO4Q6EEV6 95 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 PAQR6Q6TCH4 344 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 CASP12Q6UXS9 341 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 MAVSQ7Z434 540 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 HMGN2P46Q86SG4 172 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 ZBTB46Q86UZ6 589 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 PEX5LQ8IYB4 626 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 ZNF440Q8IYI8 595 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 C17orf78Q8N4C9 275 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 OR52N5Q8NH56 324 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 DNAJA3Q96EY1 480 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 HS6ST2Q96MM7 605 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 INPP5KQ9BT40 448 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 SF3B5Q9BWJ5 86 aaKnown RBP6.34□□□□□ -1.39
USP54-208ENST00000461520 CBLN4Q9NTU7 201 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 CALML5Q9NZT1 146 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 P2RX2Q9UBL9 471 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 UPB1Q9UBR1 384 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 POU2F3Q9UKI9 436 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 B3GALT5Q9Y2C3 310 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 SLC9A8Q9Y2E8 581 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 FLVCR1Q9Y5Y0 555 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 ROS1P08922 2347 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 NBEAL1Q6ZS30 2694 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 CUBNO60494 3623 aa6.34□□□□□ -1.39
USP54-208ENST00000461520 DSPPQ9NZW4 1301 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 FAM234BA2RU67 622 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 E7EQL1 145 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 TLX2O43763 284 aaPredicted RBP6.33□□□□□ -1.4
USP54-208ENST00000461520 CD5LO43866 347 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 NDUFS7O75251 213 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 SNNO75324 88 aaPredicted RBP6.33□□□□□ -1.4
USP54-208ENST00000461520 SLC22A3O75751 556 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 NXPH3O95157 252 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 GPIP06744 558 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 NHLRC4P0CG21 123 aaPredicted RBP6.33□□□□□ -1.4
USP54-208ENST00000461520 ZCCHC18P0CG32 403 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 CXCR1P25024 350 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 LIPAP38571 399 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 ZNF83P51522 516 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 MVDP53602 400 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 CRISP3P54108 245 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 FOXG1P55316 489 aaPredicted RBP6.33□□□□□ -1.4
USP54-208ENST00000461520 TGFBR3Q03167 851 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 MAPK11Q15759 364 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 LIN52Q52LA3 116 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 ATG16L1Q676U5 607 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 C11orf71Q6IPW1 123 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 ZNF544Q6NX49 715 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 SLC22A25Q6T423 547 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 MSANTD1Q6ZTZ1 278 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 C1QL2Q7Z5L3 287 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 MUC15Q8N387 334 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 ANKRD42Q8N9B4 389 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 POMGNT2Q8NAT1 580 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 MAPK1IP1LQ8NDC0 245 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 OR52E4Q8NGH9 312 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 OR52P1PQ8NH57 321 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 PNPT1Q8TCS8 783 aaKnown RBP6.33□□□□□ -1.4
USP54-208ENST00000461520 SCARB1Q8WTV0 552 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 TMEM45BQ96B21 275 aa6.33□□□□□ -1.4
USP54-208ENST00000461520 MAELQ96JY0 434 aaKnown RBP6.33□□□□□ -1.4
USP54-208ENST00000461520 ADAD1Q96M93 576 aaKnown RBP6.33□□□□□ -1.4
USP54-208ENST00000461520 DHRS9Q9BPW9 319 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms