RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 SLC16A1P53985 500 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 CLDN15P56746 228 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 RAP1BP61224 184 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 RAP1AP62834 184 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 MELKQ14680 651 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 FAM205BPQ63HN1 556 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 HBMQ6B0K9 141 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 BORAQ6PGQ7 559 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 TRILQ7L0X0 811 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 UEVLDQ8IX04 471 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 OR4F15Q8NGB8 312 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 OR51G2Q8NGK0 314 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 OR13F1Q8NGS4 319 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 OR2V1Q8NHB1 315 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 CRELD1Q96HD1 420 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 NAA11Q9BSU3 229 aaPredicted RBP16.47■□□□□ 0.23
CLN3-254ENST00000637050 JAM3Q9BX67 310 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 SRXN1Q9BYN0 137 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 ZDHHC11Q9H8X9 412 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 VSX1Q9NZR4 365 aaPredicted RBP16.47■□□□□ 0.23
CLN3-254ENST00000637050 NPIPA1Q9UND3 350 aa16.47■□□□□ 0.23
CLN3-254ENST00000637050 H7C1C5 153 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 TRAF3IP2O43734 574 aaPredicted RBP16.46■□□□□ 0.23
CLN3-254ENST00000637050 PTHP01270 115 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 IGHA1P01876 353 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 LCKP06239 509 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 GP2P55259 537 aaKnown RBP16.46■□□□□ 0.23
CLN3-254ENST00000637050 CARD18P57730 90 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 LCN6P62502 163 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 POU4F2Q12837 409 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 GGTLC2Q14390 218 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 PON3Q15166 354 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 SYT6Q5T7P8 510 aaPredicted RBP16.46■□□□□ 0.23
CLN3-254ENST00000637050 SHFQ7M4L6 423 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 ZNRF4Q8WWF5 429 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 ZHX1-C8orf76Q96EF9 292 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 SH3GL3Q99963 347 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 RBM38Q9H0Z9 239 aaKnown RBP16.46■□□□□ 0.23
CLN3-254ENST00000637050 TNFRSF10DQ9UBN6 386 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 MOKQ9UQ07 419 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 MED12Q93074 2177 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 GLCEO94923 617 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 VAMP5O95183 116 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 ATP6V1E1P36543 226 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 ETV1P50549 477 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 CLDN18P56856 261 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 RUNX1T1Q06455 604 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 POU4F3Q15319 338 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 LINC01590Q5TEZ4 76 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 LCN1P1Q5VSP4 162 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 PM20D2Q8IYS1 436 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 UBQLNLQ8IYU4 475 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 OR51L1Q8NGJ5 315 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 OR2T4Q8NH00 348 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 OR10D3Q8NH80 312 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 TXNDC15Q96J42 360 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 TSSK2Q96PF2 358 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 UCN2Q96RP3 112 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 SYT4Q9H2B2 425 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 ADGRL4Q9HBW9 690 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 MED29Q9NX70 200 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 CLEC2DQ9UHP7 191 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 ERGIC3Q9Y282 383 aa16.46■□□□□ 0.23
CLN3-254ENST00000637050 EXOSC1Q9Y3B2 195 aaKnown RBP16.46■□□□□ 0.23
CLN3-254ENST00000637050 SLC22A23A1A5C7 686 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 DCTN6O00399 190 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 SBK2P0C263 348 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 ZNF708P17019 499 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 MYL12AP19105 171 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 PMP22Q01453 160 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 BCL2A1Q16548 175 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 PDSS1Q5T2R2 415 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 EEF1A1P5Q5VTE0 462 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 GPAT4Q86UL3 456 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 WDFY1Q8IWB7 410 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 OR6V1Q8N148 313 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 NANOGP1Q8N7R0 232 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 PROKR2Q8NFJ6 384 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 NEIL3Q8TAT5 605 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 FAM122AQ96E09 287 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 ZMYND19Q96E35 227 aaPredicted RBP16.45■□□□□ 0.22
CLN3-254ENST00000637050 KCNK17Q96T54 332 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 ALG12Q9BV10 488 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 TSPAN10Q9H1Z9 355 aaPredicted RBP16.45■□□□□ 0.22
CLN3-254ENST00000637050 LSM2Q9Y333 95 aaKnown RBP16.45■□□□□ 0.22
CLN3-254ENST00000637050 PCDHGB7Q9Y5F8 929 aa16.45■□□□□ 0.22
CLN3-254ENST00000637050 IGHV3-15A0A0B4J1V0 119 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 SMAD9O15198 467 aaKnown RBP16.44■□□□□ 0.22
CLN3-254ENST00000637050 AHCYL1O43865 530 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 CXCL13O43927 109 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 ACTL6AO96019 429 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 PDGFAP04085 211 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 ITGB2P05107 769 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 LIMS3P0CW19 117 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 LIMS4P0CW20 117 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 ZNF43P17038 809 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 ENPP1P22413 925 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 PYCR1P32322 319 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 BIDP55957 195 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 C1DQ13901 141 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms