RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 BBS5Q8N3I7 341 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 ZADH2Q8N4Q0 377 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 ZNF557Q8N988 423 aaPredicted RBP2.81□□□□□ -1.96
VPS29-205ENST00000548539 SPATA4Q8NEY3 305 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 B3GNT7Q8NFL0 401 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 KIFAP3Q92845 792 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 STMN2Q93045 179 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 MYDGFQ969H8 173 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 OR11A1Q9GZK7 315 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 DEFB127Q9H1M4 99 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 NUP50Q9UKX7 468 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 NEU3Q9UQ49 428 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 FANCIQ9NVI1 1328 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 MSH6P52701 1360 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 ADAMTS9Q9P2N4 1935 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 SMCO2A6NFE2 343 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 KRTAP4-16G5E9R7 235 aaPredicted RBP2.8□□□□□ -1.96
VPS29-205ENST00000548539 MGRN1O60291 552 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 DUX4L4P0CJ87 422 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 ZNF17P17021 662 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 GPR6P46095 362 aaPredicted RBP2.8□□□□□ -1.96
VPS29-205ENST00000548539 NPBWR2P48146 333 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 ACLYP53396 1101 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 SUB1P53999 127 aaKnown RBP eCLIP2.8□□□□□ -1.965e-6■■■■■ 28.3
VPS29-205ENST00000548539 CDH6P55285 790 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 FBXW4P57775 412 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 CKAP4Q07065 602 aaKnown RBP2.8□□□□□ -1.96
VPS29-205ENST00000548539 VPS26BQ4G0F5 336 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 LRRC10Q5BKY1 277 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 SLC8B1Q6J4K2 584 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 SASS6Q6UVJ0 657 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 LHFPL3Q86UP9 236 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 MS4A15Q8N5U1 240 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 SDR42E1Q8WUS8 393 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 SGK3Q96BR1 496 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 PANX1Q96RD7 426 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 NRIP2Q9BQI9 281 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 RANBP3Q9H6Z4 567 aaPredicted RBP2.8□□□□□ -1.96
VPS29-205ENST00000548539 VPS37BQ9H9H4 285 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 EML4Q9HC35 981 aaKnown RBP2.8□□□□□ -1.96
VPS29-205ENST00000548539 MMP26Q9NRE1 261 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 ADAM22Q9P0K1 906 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 RPS6KB2Q9UBS0 482 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 ZNF225Q9UK10 706 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 TRAPPC4Q9Y296 219 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 HEBP2Q9Y5Z4 205 aa2.8□□□□□ -1.96
VPS29-205ENST00000548539 NSD2O96028 1365 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 IGKV1D-13A0A0B4J2D9 117 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 A0A0G2JN53 185 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 ERVV-1B6SEH8 477 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 PANO1I0J062 215 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 SOX15O60248 233 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 IGHV4-34P06331 123 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 ANXA5P08758 320 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 CSF3P09919 207 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 GKN3PP0CG01 181 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 IGKV1-13P0DP09 117 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 ZNF43P17038 809 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 CNR1P21554 472 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 CCNCP24863 283 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 CCNE1P24864 410 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 NUDT1P36639 197 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 RORCP51449 518 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 WNT4P56705 351 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 MRPS22P82650 360 aaKnown RBP2.79□□□□□ -1.96
VPS29-205ENST00000548539 FZD2Q14332 565 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 PSG5Q15238 335 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 MRPL23Q16540 153 aaKnown RBP2.79□□□□□ -1.96
VPS29-205ENST00000548539 ALKBH6Q3KRA9 238 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 CARD17Q5XLA6 110 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 LRRC66Q68CR7 880 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 FAM71E2Q8N5Q1 922 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 EID2Q8N6I1 236 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 CEP112Q8N8E3 955 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 CCDC54Q8NEL0 328 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 OR4F15Q8NGB8 312 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 OR1S2Q8NGQ3 325 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 ATP5SQ99766 215 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 SH3GL1Q99961 368 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 SLCO1B3Q9NPD5 702 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 GLRX2Q9NS18 164 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 EXD2Q9NVH0 621 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 DEC1Q9P2X7 70 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 XCL2Q9UBD3 114 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 LSM7Q9UK45 103 aaKnown RBP2.79□□□□□ -1.96
VPS29-205ENST00000548539 PITPNC1Q9UKF7 332 aa2.79□□□□□ -1.96
VPS29-205ENST00000548539 CNTNAP1P78357 1384 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 SMCO3A2RU48 225 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 DLGAP1O14490 977 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 DNALI1O14645 258 aaPredicted RBP2.78□□□□□ -1.96
VPS29-205ENST00000548539 OR2J3O76001 311 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 CLIC3O95833 236 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 TSPAN13O95857 204 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 HPGDP15428 266 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 ZNF24P17028 368 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 RCC1P18754 421 aaPredicted RBP2.78□□□□□ -1.96
VPS29-205ENST00000548539 SLC26A3P40879 764 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 PRRX1P54821 245 aa2.78□□□□□ -1.96
VPS29-205ENST00000548539 FGF8P55075 233 aaPredicted RBP2.78□□□□□ -1.96
VPS29-205ENST00000548539 GPX6P59796 221 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms