RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 RIOK2Q9BVS4 552 aaKnown RBP1.38□□□□□ -2.19
VPS13A-206ENST00000376646 OR11A1Q9GZK7 315 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 MFFQ9GZY8 342 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 SRMSQ9H3Y6 488 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 NANOGQ9H9S0 305 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 MMP26Q9NRE1 261 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 CCL28Q9NRJ3 127 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 PSMC3IPQ9P2W1 217 aaPredicted RBP1.38□□□□□ -2.19
VPS13A-206ENST00000376646 CLCF1Q9UBD9 225 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 N6AMT1Q9Y5N5 214 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 FANCIQ9NVI1 1328 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 C12orf71A8MTZ7 269 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 CCL21O00585 134 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 GOSR2O14653 212 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 RNF13O43567 381 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 INSP01308 110 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 IGHV2-5P01817 119 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 ALDOBP05062 364 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 FGF1P05230 155 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 TCN1P20061 433 aaPredicted RBP1.38□□□□□ -2.19
VPS13A-206ENST00000376646 CMA1P23946 247 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 IFNA8P32881 189 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 NUDT1P36639 197 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 VHLP40337 213 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 NPBWR2P48146 333 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 KIAA0087Q14695 138 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 GPNMBQ14956 572 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 PPP1R7Q15435 360 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 HSP90AB3PQ58FF7 597 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 PRAMEF20Q5VT98 475 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 C6orf89Q6UWU4 347 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 TMEM107Q6UX40 140 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 ZNF836Q6ZNA1 936 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 ACP7Q6ZNF0 438 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 SLC25A48Q6ZT89 311 aaKnown RBP1.38□□□□□ -2.19
VPS13A-206ENST00000376646 PLPPR1Q8TBJ4 325 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 SLC22A8Q8TCC7 542 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 ACER1Q8TDN7 264 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 STMN2Q93045 179 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 RARRES2Q99969 163 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 NUP58Q9BVL2 599 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 CLMPQ9H6B4 373 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 EML4Q9HC35 981 aaKnown RBP1.38□□□□□ -2.19
VPS13A-206ENST00000376646 INPP5EQ9NRR6 644 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 MEGF6O75095 1541 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 MSH6P52701 1360 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 IGKV1D-13A0A0B4J2D9 117 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 A0A0G2JN53 185 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 RSPH10B2B2RC85 870 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 MGRN1O60291 552 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 IGHV4-34P06331 123 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 CRYGBP07316 175 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 RSPH10BP0C881 870 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 PABPC4LP0CB38 370 aaKnown RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 IGKV1-13P0DP09 117 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 TROVE2P10155 538 aaKnown RBP eCLIP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 HPGDP15428 266 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 CCNE1P24864 410 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 RORAP35398 523 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 YAP1P46937 504 aaKnown RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 PRMT2P55345 433 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 SH3BGRP55822 239 aaPredicted RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 WNT4P56705 351 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 FBXW4P57775 412 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 SRSF5Q13243 272 aaKnown RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 FZD2Q14332 565 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 ZNF658BQ4V348 819 aaPredicted RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 ARMC12Q5T9G4 340 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 Q6P435 159 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 LHFPL3Q86UP9 236 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 ZNF557Q8N988 423 aaPredicted RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 RAB3IL1Q8TBN0 382 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 ELSPBP1Q96BH3 223 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 NRTNQ99748 197 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 CENPKQ9BS16 269 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 DEFB127Q9H1M4 99 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 MRPL47Q9HD33 250 aaKnown RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 STARD10Q9Y365 291 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 ZNFX1Q9P2E3 1918 aaKnown RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 GTF3C1Q12789 2109 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 OR2AG2A6NM03 316 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 ERVV-1B6SEH8 477 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 DFNA5O60443 496 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 WBP4O75554 376 aaKnown RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 FGGP02679 453 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 C2P06681 752 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 TPM2P07951 284 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 TOP1P11387 765 aaKnown RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 RCC1P18754 421 aaPredicted RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 GPR6P46095 362 aaPredicted RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 CDH6P55285 790 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 TGM3Q08188 693 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 CUL2Q13617 745 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 RCN1Q15293 331 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 MRPL23Q16540 153 aaKnown RBP1.37□□□□□ -2.19
VPS13A-206ENST00000376646 VPS26BQ4G0F5 336 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 SLC8B1Q6J4K2 584 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 TTC5Q8N0Z6 440 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 BBS5Q8N3I7 341 aa1.37□□□□□ -2.19
VPS13A-206ENST00000376646 ZADH2Q8N4Q0 377 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms