RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 ELOA3BQ3SY89 546 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 LIX1LQ8IVB5 337 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 TCTE3Q8IZS6 198 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 ELOA3Q8NG57 546 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 SMPDL3BQ92485 455 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 HGDQ93099 445 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 C3orf49Q96BT1 292 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 MESP1Q9BRJ9 268 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 B3GAT2Q9NPZ5 323 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 DDX28Q9NUL7 540 aaKnown RBP15.22■□□□□ 0.03
CPSF4-201ENST00000292476 FOXJ2Q9P0K8 574 aa15.22■□□□□ 0.03
CPSF4-201ENST00000292476 TRAV27A0A087WT01 109 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 TRAV1-2A0A0B4J238 106 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 LINC00854A0A1B0GVQ3 168 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 FAM25AB3EWG3 89 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 FAM25CB3EWG5 89 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 FAM25GB3EWG6 89 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 CDC40O60508 579 aaKnown RBP eCLIP15.21■□□□□ 0.03
CPSF4-201ENST00000292476 RAD1O60671 282 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 ADAM11O75078 769 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 NDUFB2O95178 105 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 PPP1R3DO95685 299 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 INPP1P49441 399 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 FHL1Q13642 323 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 NTRK2Q16620 822 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 NDUFAF6Q330K2 333 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 FAM69BQ5VUD6 431 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 CBLN3Q6UW01 205 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 ABHD4Q8TB40 342 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 TMEM234Q8WY98 164 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 ARSGQ96EG1 525 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 MARVELD1Q9BSK0 173 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 OR51V1Q9H2C8 321 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 CHRNA9Q9UGM1 479 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 ZMIZ1Q9ULJ6 1067 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 ICAM5Q9UMF0 924 aa15.21■□□□□ 0.03
CPSF4-201ENST00000292476 ZC3H12DA2A288 527 aaKnown RBP15.2■□□□□ 0.02
CPSF4-201ENST00000292476 TMEM8BA6NDV4 472 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 OGG1O15527 345 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 NUDT14O95848 222 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 YES1P07947 543 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 OR2T7P0C7T2 308 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 GP1BBP13224 206 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 NPR2P20594 1047 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 PTNP21246 168 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 NOS3P29474 1203 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 OTX2P32243 289 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 THBS2P35442 1172 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 DLSTP36957 453 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 FBXW4P57775 412 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 LGALS3BPQ08380 585 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 SNTA1Q13424 505 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 INSL4Q14641 139 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 SF3B4Q15427 424 aaKnown RBP eCLIP15.2■□□□□ 0.023e-7■■■■■ 27.6
CPSF4-201ENST00000292476 SLC35D3Q5M8T2 416 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 IDNKQ5T6J7 187 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 ARL9Q6T311 187 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 PPP1R32Q7Z5V6 425 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 ARMC10Q8N2F6 343 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 KDF1Q8NAX2 398 aaPredicted RBP15.2■□□□□ 0.02
CPSF4-201ENST00000292476 OR2T27Q8NH04 317 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 OR51A7Q8NH64 312 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 RNF138Q8WVD3 245 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 PHYHIPQ92561 330 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 SPACA9Q96E40 222 aaPredicted RBP15.2■□□□□ 0.02
CPSF4-201ENST00000292476 C4orf36Q96KX1 117 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 PGLYRP3Q96LB9 341 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 RASL10BQ96S79 203 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 ZNF160Q9HCG1 818 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 RABL2AQ9UBK7 228 aaPredicted RBP15.2■□□□□ 0.02
CPSF4-201ENST00000292476 RABL2BQ9UNT1 228 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 CELSR3Q9NYQ7 3312 aa15.2■□□□□ 0.02
CPSF4-201ENST00000292476 A0A0B4J293 547 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 FAM240BA0A1B0GVZ2 78 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.19■□□□□ 0.02
CPSF4-201ENST00000292476 SCO2O43819 266 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 ORC5O43913 435 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 TMEM127O75204 238 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 ITGA10O75578 1167 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 ELK1P19419 428 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 BTG1P62324 171 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 MRPS15P82914 257 aaKnown RBP15.19■□□□□ 0.02
CPSF4-201ENST00000292476 HSF2Q03933 536 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 CDK10Q15131 360 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 SFXN4Q6P4A7 337 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 TMEM81Q6P7N7 255 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 ATG4DQ86TL0 474 aaPredicted RBP15.19■□□□□ 0.02
CPSF4-201ENST00000292476 NR2C2APQ86WQ0 139 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 CREB3L1Q96BA8 519 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 SGTBQ96EQ0 304 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 TNFRSF13CQ96RJ3 184 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 CNN2Q99439 309 aaKnown RBP15.19■□□□□ 0.02
CPSF4-201ENST00000292476 TBX5Q99593 518 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 ADAM19Q9H013 955 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 KLRF1Q9NZS2 232 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 EXTL2Q9UBQ6 330 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 ST6GALNAC2Q9UJ37 374 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 APC2O95996 2303 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 A0A0G2JK05 382 aa15.19■□□□□ 0.02
CPSF4-201ENST00000292476 FAM47E-STBD1D6RA91 191 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 137.9 ms