RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 FOXJ3Q9UPW0 622 aa20.71■□□□□ 0.91
VPS53-211ENST00000571805 NUP210LQ5VU65 1888 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 BRWD1Q9NSI6 2320 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 HPXP02790 462 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 ATXN8OSP0DMR3 200 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 ADRA2CP18825 462 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 GFERP55789 205 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 GRM7Q14831 915 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 MESTQ5EB52 335 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 OR5AK2Q8NH90 309 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 TSPAN32Q96QS1 320 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 TRBV5-5A0A0J9YX44 114 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 TSC22D2O75157 780 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 PER3P56645 1201 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 BIKQ13323 160 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 CAMK2DQ13557 499 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 ZBTB37Q5TC79 503 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 FAM220AQ7Z4H9 259 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 OR6V1Q8N148 313 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 UCK1Q9HA47 277 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 AKAP7Q9P0M2 348 aaPredicted RBP20.7■□□□□ 0.9
VPS53-211ENST00000571805 GRHPRQ9UBQ7 328 aa20.7■□□□□ 0.9
VPS53-211ENST00000571805 PCDH15Q96QU1 1955 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 FITM1A5D6W6 292 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 H7C1C5 153 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 CALCBP10092 127 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 MAOBP27338 520 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 LCN6P62502 163 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 EMC4Q5J8M3 183 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 LUZP2Q86TE4 346 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 FAM160A2Q8N612 972 aaPredicted RBP20.69■□□□□ 0.9
VPS53-211ENST00000571805 SYNPRQ8TBG9 265 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 RTN4RQ9BZR6 473 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 ADAM19Q9H013 955 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 BEX1Q9HBH7 125 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 PNO1Q9NRX1 252 aaKnown RBP20.69■□□□□ 0.9
VPS53-211ENST00000571805 KLHL9Q9P2J3 617 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 KLK11Q9UBX7 282 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 ELF5Q9UKW6 265 aaPredicted RBP20.69■□□□□ 0.9
VPS53-211ENST00000571805 FLVCR2Q9UPI3 526 aa20.69■□□□□ 0.9
VPS53-211ENST00000571805 A0A1B0GVI7 797 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 TVP23AA6NH52 213 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 KHNYNO15037 678 aaKnown RBP20.68■□□□□ 0.9
VPS53-211ENST00000571805 SULT1B1O43704 296 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 PEX14O75381 377 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 KRT33AO76009 404 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 ECDO95905 644 aaPredicted RBP20.68■□□□□ 0.9
VPS53-211ENST00000571805 TACR3P29371 465 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 ZP1P60852 638 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 RPS15P62841 145 aaKnown RBP20.68■□□□□ 0.9
VPS53-211ENST00000571805 RPL6Q02878 288 aaKnown RBP20.68■□□□□ 0.9
VPS53-211ENST00000571805 TCTE1Q5JU00 501 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 LRRTM1Q86UE6 522 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 CDH24Q86UP0 819 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 PIAS4Q8N2W9 510 aaPredicted RBP20.68■□□□□ 0.9
VPS53-211ENST00000571805 OR8H1Q8NGG4 311 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 TAAR8Q969N4 342 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 S100A16Q96FQ6 103 aaKnown RBP20.68■□□□□ 0.9
VPS53-211ENST00000571805 SLC46A1Q96NT5 459 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 TGM7Q96PF1 710 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 SLC38A3Q99624 504 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 MRI1Q9BV20 369 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 DLL4Q9NR61 685 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 SOHLH2Q9NX45 425 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 NKIRAS2Q9NYR9 191 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 A0A1B0GTH9 108 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 LILRA5A6NI73 299 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 RAB40ALP0C0E4 278 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 PSMB1P20618 241 aaKnown RBP20.68■□□□□ 0.9
VPS53-211ENST00000571805 SEZ6L2Q6UXD5 910 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 NUP54Q7Z3B4 507 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 EID2Q8N6I1 236 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 SMRP1Q8NCR6 262 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 RLN3Q8WXF3 142 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 RAB40AQ8WXH6 277 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 CITED4Q96RK1 184 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 HEXA-AS1Q9H8Q6 139 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 TCF7L1Q9HCS4 588 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 NPTNQ9Y639 398 aa20.68■□□□□ 0.9
VPS53-211ENST00000571805 A8MUA0 341 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 ELOCQ15369 112 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 OR2T4Q8NH00 348 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 FCAMRQ8WWV6 532 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 HAVCR1Q96D42 359 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 PDE7BQ9NP56 450 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 EMC3Q9P0I2 261 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 NAP1L6A6NFF2 107 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 C2CD4DB7Z1M9 353 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 SSNA1O43805 119 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 AKR7A3O95154 331 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 TPOP07202 933 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 MAPK3P27361 379 aaPredicted RBP20.67■□□□□ 0.9
VPS53-211ENST00000571805 NUDT1P36639 197 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 OR3A3P47888 321 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 SOX2P48431 317 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 CLPPQ16740 277 aaPredicted RBP20.67■□□□□ 0.9
VPS53-211ENST00000571805 ELFN2Q5R3F8 820 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 TEX261Q6UWH6 196 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 TMEM151BQ8IW70 566 aa20.67■□□□□ 0.9
VPS53-211ENST00000571805 DND1Q8IYX4 353 aaKnown RBP20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms