RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 HIF3AQ9Y2N7 669 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 HCFC1P51610 2035 aa11.27□□□□□ -0.61
SS18-202ENST00000269138 HECTD1Q9ULT8 2610 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 SLC35F4A4IF30 521 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 PTP4A3O75365 173 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 UPK3AO75631 287 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 UGT2B10P36537 528 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 BIDP55957 195 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 RPS4XP62701 263 aaKnown RBP11.26□□□□□ -0.61
SS18-202ENST00000269138 FAPQ12884 760 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 MELKQ14680 651 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 ZNF770Q6IQ21 691 aaPredicted RBP11.26□□□□□ -0.61
SS18-202ENST00000269138 PGBD2Q6P3X8 592 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 Q6ZT83 130 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 LINGO2Q7L985 606 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 DMRTC2Q8IXT2 367 aaPredicted RBP11.26□□□□□ -0.61
SS18-202ENST00000269138 TMEM123Q8N131 208 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 LRRC75AQ8NAA5 344 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 LINC01560Q8TB33 94 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 LRRC46Q96FV0 321 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 SLCO5A1Q9H2Y9 848 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 INIPQ9NRY2 104 aa11.26□□□□□ -0.61
SS18-202ENST00000269138 FOXD3Q9UJU5 478 aaPredicted RBP11.26□□□□□ -0.61
SS18-202ENST00000269138 UNC119BA6NIH7 251 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ANKRD65E5RJM6 399 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 C16orf97H3BN30 126 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 GNGT2O14610 69 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 CLOCKO15516 846 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 CCNB2O95067 398 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 GASTP01350 101 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 IGHV1-2P23083 117 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 SLC9A3P48764 834 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 FXYD6P3P58550 94 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ACTR3P61158 418 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 CAMK2DQ13557 499 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ZBED5Q49AG3 693 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ALG10Q5BKT4 473 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 PHYHD1Q5SRE7 291 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 C9orf135Q5VTT2 229 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 C1orf94Q6P1W5 598 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 C22orf34Q6ZV56 151 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 KIF18BQ86Y91 864 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 DUS3LQ96G46 650 aaKnown RBP11.25□□□□□ -0.61
SS18-202ENST00000269138 DENND2DQ9H6A0 471 aaPredicted RBP11.25□□□□□ -0.61
SS18-202ENST00000269138 YY1AP1Q9H869 796 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 NTN4Q9HB63 628 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 UPB1Q9UBR1 384 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 DNAJB9Q9UBS3 223 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 RCE1Q9Y256 329 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 SIGLEC7Q9Y286 467 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 AP4S1Q9Y587 144 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ALPK2Q86TB3 2170 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ADGRG4Q8IZF6 3080 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ZNF726A6NNF4 738 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 MCIDASD6RGH6 385 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 PDLIM1O00151 329 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 SLC43A1O75387 559 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 LYZL6O75951 148 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ITGA5P08648 1049 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 HOXB6P17509 224 aaKnown RBP11.25□□□□□ -0.61
SS18-202ENST00000269138 GSSP48637 474 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 CTXN1P60606 82 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 RUNX1T1Q06455 604 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ACKR1Q16570 336 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 MICAQ29983 383 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 SFRP5Q5T4F7 317 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ZNF787Q6DD87 383 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 THSD4Q6ZMP0 1018 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 HS3ST5Q8IZT8 346 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 AQP11Q8NBQ7 271 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 GNPDA2Q8TDQ7 276 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 PYDC1Q8WXC3 89 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 WFIKKN1Q96NZ8 548 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 RAB3IPQ96QF0 476 aaPredicted RBP11.25□□□□□ -0.61
SS18-202ENST00000269138 SPOCK3Q9BQ16 436 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 KRCC1Q9NPI7 259 aaPredicted RBP11.25□□□□□ -0.61
SS18-202ENST00000269138 ARMC1Q9NVT9 282 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 ASB6Q9NWX5 421 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 MALT1Q9UDY8 824 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 IL20RAQ9UHF4 553 aa11.25□□□□□ -0.61
SS18-202ENST00000269138 A0A1W2PRG6 482 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 CNOT4O95628 575 aaKnown RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 BCL10O95999 233 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 COX6B1P14854 86 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 PSMB1P20618 241 aaKnown RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 COX5AP20674 150 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 PRKACGP22612 351 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 FPR3P25089 353 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 DNAJA1P31689 397 aaKnown RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 IFNGR2P38484 337 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 KIR2DL3P43628 341 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 PCYT1AP49585 367 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 ERVK-25P63136 954 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 SORDQ00796 357 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 ITGADQ13349 1161 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 TOP3AQ13472 1001 aaPredicted RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 P2RY6Q15077 328 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 ARMC4Q5T2S8 1044 aa11.24□□□□□ -0.61
SS18-202ENST00000269138 BHLHA15Q7RTS1 189 aaPredicted RBP11.24□□□□□ -0.61
SS18-202ENST00000269138 AMIGO2Q86SJ2 522 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms