RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 OR52N4Q8NGI2 321 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 OR9Q1Q8NGQ5 310 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 OR2T11Q8NH01 316 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 OR11H2Q8NH07 326 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 SPATA3Q8NHX4 192 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 NUBPLQ8TB37 319 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 OSTF1Q92882 214 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 GLYATL1Q969I3 302 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ST6GALNAC6Q969X2 333 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 PTH2Q96A98 100 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 SLCO4A1Q96BD0 722 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ARSGQ96EG1 525 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 PAGE5Q96GU1 130 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 KLHL15Q96M94 604 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ZNF347Q96SE7 839 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 CNN2Q99439 309 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 KLF6Q99612 283 aaPredicted RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 SYT11Q9BT88 431 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 WRAP53Q9BUR4 548 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 FTHL17Q9BXU8 183 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ULBP2Q9BZM5 246 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 PPP1R3EQ9H7J1 279 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ZNF696Q9H7X3 374 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 C6orf50Q9HD87 102 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 CNOT8Q9UFF9 292 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 ZNF223Q9UK11 482 aaPredicted RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 FBXW11Q9UKB1 542 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 RNF150Q9ULK6 438 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 PDE10AQ9Y233 779 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ANGPT4Q9Y264 503 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 OR10H1Q9Y4A9 318 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 USP42Q9H9J4 1324 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 PNPLA6Q8IY17 1366 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ZFYVE9O95405 1425 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 MYH15Q9Y2K3 1946 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 TRBV5-3A0A0A0MS03 114 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 A0A1W2PQM1 296 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 TMEM131LA2VDJ0 1609 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 FAM90A18PA6NE21 464 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 FAM90A16PA6NEW6 464 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 NEMP2A6NFY4 417 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 SH2D7A6NKC9 451 aaPredicted RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 FAM90A9PA6NNJ1 464 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 FAM90A5PA8MXJ8 464 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 G3V3Y1 287 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 I6L893 689 aaPredicted RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 M0QZQ0 153 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 TRAFD1O14545 582 aaPredicted RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 SIVA1O15304 175 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 CYB5BO43169 146 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 TGOLN2O43493 480 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 SNAP91O60641 907 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 PCF11O94913 1555 aaKnown RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 OR4F21O95013 312 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 TFAP2AP05549 437 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 HTR1AP08908 422 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 NUDT17P0C025 328 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 FAM90A15PP0C7V4 464 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 FAM90A14PP0C7W9 464 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 RRASP10301 218 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 PSG1P11464 419 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 FCGR2AP12318 317 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 GABRA1P14867 456 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 HLA-GP17693 338 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 AMD1P17707 334 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 TPSB2P20231 275 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 S1PR1P21453 382 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 PCMT1P22061 227 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 ANOS1P23352 680 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 MMP11P24347 488 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 GCAP28676 217 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 IL12AP29459 219 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 CASP1P29466 404 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 AKR1C3P42330 323 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 MAP2K4P45985 399 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 RPS9P46781 194 aaKnown RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 TTPAP49638 278 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 RAB5BP61020 215 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 RGS1Q08116 209 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 ZNF616Q08AN1 781 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 BST2Q10589 180 aaKnown RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 KEAP1Q14145 624 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 NCOA2Q15596 1464 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 TPSAB1Q15661 275 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 CDO1Q16878 200 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 POM121L1PQ3SYA9 428 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 ANXA2RQ3ZCQ2 193 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 EIPR1Q53HC9 387 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 C6orf52Q5T4I8 152 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 IDNKQ5T6J7 187 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 SYPL2Q5VXT5 272 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 OR4F3Q6IEY1 312 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 SLC39A4Q6P5W5 647 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 PODNL1Q6PEZ8 512 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 DCUN1D2Q6PH85 259 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 DHRS13Q6UX07 377 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 C16orf89Q6UX73 402 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 FAM131AQ6UXB0 335 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 HACD2Q6Y1H2 254 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 B3GLCTQ6Y288 498 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms