RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 ARPC3O15145 178 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 NPIPB7O75200 414 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 HIST1H2ABP04908 130 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 HLA-DOBP13765 273 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 ZNF19P17023 458 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 F8A1P23610 371 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 CASP3P42574 277 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 RPS27P42677 84 aaKnown RBP11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 CAV3P56539 151 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 E2F1Q01094 437 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 TPBGQ13641 420 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 ZNF404Q494X3 552 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 TP53I3Q53FA7 332 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 ZNF468Q5VIY5 522 aaPredicted RBP11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 HIST3H2AQ7L7L0 130 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 NUP54Q7Z3B4 507 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 WDFY1Q8IWB7 410 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 SUMF1Q8NBK3 374 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 OR5J2Q8NH18 312 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 SLC22A8Q8TCC7 542 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 HIST1H2ACQ93077 130 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 CCNL2Q96S94 520 aaPredicted RBP11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 GPX7Q96SL4 187 aaPredicted RBP11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 PARD6AQ9NPB6 346 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 TMEM9BQ9NQ34 198 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 KLHL21Q9UJP4 597 aa11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 MRPS18BQ9Y676 258 aaKnown RBP11.52□□□□□ -0.57
VIPAS39-206ENST00000553888 NSG1A0A0A6YYJ2 146 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 CD8B2A6NJW9 211 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 CD8BP10966 210 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 Q0VFX4 171 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 NTRK2Q16620 822 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 ZNF829Q3KNS6 432 aaPredicted RBP11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 TIMM50Q3ZCQ8 353 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 C6orf15Q6UXA7 325 aaPredicted RBP11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 PPP1R32Q7Z5V6 425 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 MFSD4AQ8N468 514 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 ZNF417Q8TAU3 575 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 ZNF587Q96SQ5 575 aaPredicted RBP11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 NMNAT2Q9BZQ4 307 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 STRADBQ9C0K7 418 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 FKRPQ9H9S5 495 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 C12orf10Q9HB07 376 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 ZNF229Q9UJW7 825 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 TCFL5Q9UL49 500 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 SSR3Q9UNL2 185 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 WIF1Q9Y5W5 379 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 CHCHD2Q9Y6H1 151 aaPredicted RBP11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 PRR32B1ATL7 298 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 CDRT1O95170 752 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 SDHAP31040 664 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 KRR1Q13601 381 aaKnown RBP11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 GALEQ14376 348 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 MELKQ14680 651 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 GLYR1Q49A26 553 aaPredicted RBP11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 B3GNTL1Q67FW5 361 aaPredicted RBP11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 OR52N1Q8NH53 320 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 RNF138Q8WVD3 245 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 SLC39A7Q92504 469 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 GRHPRQ9UBQ7 328 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 CFAP47Q6ZTR5 3102 aa11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 CNOT1A5YKK6 2376 aaKnown RBP11.51□□□□□ -0.57
VIPAS39-206ENST00000553888 SHISA3A0PJX4 238 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 TVP23AA6NH52 213 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 A8MVM7 634 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 RNF13O43567 381 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 CCL3P10147 92 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 TUBA1BP68363 451 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 INAQ16352 499 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 FAM69AQ5T7M9 428 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 LINC01590Q5TEZ4 76 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 TUBA1AQ71U36 451 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 WDSUB1Q8N9V3 476 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 POC1BQ8TC44 478 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 TTC9Q92623 222 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 SMAD5Q99717 465 aaKnown RBP11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 CAB39Q9Y376 341 aaPredicted RBP11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 ZNF670-ZNF695F2Z2N8 137 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 CTDSP2O14595 271 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 ARHGEF9O43307 516 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 F10P00742 488 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 SDC2P34741 201 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 TMED10P49755 219 aaKnown RBP11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 PON3Q15166 354 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 OR7A5Q15622 319 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 ARL9Q6T311 187 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 PM20D2Q8IYS1 436 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 TAAR9Q96RI9 348 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 UBL7Q96S82 380 aaPredicted RBP11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 JAM3Q9BX67 310 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 SYT4Q9H2B2 425 aa11.5□□□□□ -0.57
VIPAS39-206ENST00000553888 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.49□□□□□ -0.57
VIPAS39-206ENST00000553888 CLDN25C9JDP6 229 aa11.49□□□□□ -0.57
VIPAS39-206ENST00000553888 AKAP8O43823 692 aaKnown RBP11.49□□□□□ -0.57
VIPAS39-206ENST00000553888 NCR1O76036 304 aa11.49□□□□□ -0.57
VIPAS39-206ENST00000553888 DLGAP3O95886 979 aa11.49□□□□□ -0.57
VIPAS39-206ENST00000553888 MT-CO3P00414 261 aa11.49□□□□□ -0.57
VIPAS39-206ENST00000553888 IGF2P01344 180 aa11.49□□□□□ -0.57
VIPAS39-206ENST00000553888 PSKH1P11801 424 aa11.49□□□□□ -0.57
VIPAS39-206ENST00000553888 NAGAP17050 411 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms