RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 OR5H14A6NHG9 310 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 OR5H1A6NKK0 313 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF891A8MT65 544 aaPredicted RBP12.91□□□□□ -0.34
CSPG4-201ENST00000308508 SLC31A2O15432 143 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 GIPP09681 153 aaPredicted RBP12.91□□□□□ -0.34
CSPG4-201ENST00000308508 IVDP26440 423 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 CCR6P51684 374 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 IKZF1Q13422 519 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 CST6Q15828 149 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 GHSRQ92847 366 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 SCML1Q9UN30 329 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 SLC45A1Q9Y2W3 748 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 GASTP01350 101 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 H2AFB1P0C5Y9 115 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 SLC39A13Q96H72 371 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 PLK3Q9H4B4 646 aa12.91□□□□□ -0.34
CSPG4-201ENST00000308508 OR2F2O95006 317 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 IGFBP1P08833 259 aaPredicted RBP12.9□□□□□ -0.34
CSPG4-201ENST00000308508 CALCRP30988 508 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 CHRNEQ04844 493 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 OR2F1Q13607 317 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 SMN1Q16637 294 aaKnown RBP12.9□□□□□ -0.34
CSPG4-201ENST00000308508 HSD17B11Q8NBQ5 300 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 APH1BQ8WW43 257 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 DHRS4Q9BTZ2 278 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 C11orf49Q9H6J7 331 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 SIAEQ9HAT2 523 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 NPFFR2Q9Y5X5 522 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 CCDC88CQ9P219 2028 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 KIR2DS3Q14952 304 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 CDONQ4KMG0 1287 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 Q6ZNX1 250 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 WDR76Q9H967 626 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 UBQLN4Q9NRR5 601 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 TRBV4-1A0A0J9YWV2 114 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 ACOD1A6NK06 481 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 OR6C76A6NM76 312 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 ADGRE4PQ86SQ3 457 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 RPL3LQ92901 407 aaKnown RBP12.9□□□□□ -0.34
CSPG4-201ENST00000308508 TMEM18Q96B42 140 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 RAB22AQ9UL26 194 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 CBLCQ9ULV8 474 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 A3GALT2U3KPV4 340 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 A0A0J9YY10 115 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 PMP2P02689 132 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 PDE7AQ13946 482 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 LRRC26Q2I0M4 334 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 NXNL2Q5VZ03 156 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 SPRED1Q7Z699 444 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 SLC17A9Q9BYT1 436 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 PFKMP08237 780 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 BLVRBP30043 206 aaPredicted RBP12.9□□□□□ -0.34
CSPG4-201ENST00000308508 OPN5Q6U736 354 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 RANBP10Q6VN20 620 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 TMEM106AQ96A25 262 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 GPR174Q9BXC1 333 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 MRPS28Q9Y2Q9 187 aaKnown RBP12.9□□□□□ -0.34
CSPG4-201ENST00000308508 YTHDF2Q9Y5A9 579 aaKnown RBP12.9□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF840PA6NDX5 716 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 LGALS8O00214 317 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 ZNF593O00488 134 aaPredicted RBP12.9□□□□□ -0.34
CSPG4-201ENST00000308508 POU3F2P20265 443 aaPredicted RBP12.9□□□□□ -0.34
CSPG4-201ENST00000308508 LSMEM2Q8N112 164 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 NHLRC2Q8NBF2 726 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 OR52R1Q8NGF1 315 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 SLC6A18Q96N87 628 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 OR52A1Q9UKL2 312 aa12.9□□□□□ -0.34
CSPG4-201ENST00000308508 CSO75390 466 aaKnown RBP12.89□□□□□ -0.35
CSPG4-201ENST00000308508 HTR1FP30939 366 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 HBA1P69905 142 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 PRR22Q8IZ63 422 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 CBARPQ8N350 705 aaPredicted RBP12.89□□□□□ -0.35
CSPG4-201ENST00000308508 CXXC1Q9P0U4 656 aaPredicted RBP12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ARL2-SNX15V9GYD0 113 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ATP1B1P05026 303 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 OR5AR1Q8NGP9 310 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 TRDV1A0A1B0GX56 115 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 SPP1P10451 314 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 SRMP19623 302 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 MAKP20794 623 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 GABRA4P48169 554 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 CLEC1AQ8NC01 280 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 MTCH1Q9NZJ7 389 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 TRABD2BA6NFA1 517 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF724A8MTY0 619 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 CLEC3BP05452 202 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 TFAP2AP05549 437 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 CCR9P51686 369 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 POU3F1Q03052 451 aaPredicted RBP12.89□□□□□ -0.35
CSPG4-201ENST00000308508 PXDC1Q5TGL8 231 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF620Q6ZNG0 422 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 PRSS35Q8N3Z0 413 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ZNF629Q9UEG4 869 aaPredicted RBP12.89□□□□□ -0.35
CSPG4-201ENST00000308508 H7BYZ3 331 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 DAPP51397 102 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 TMEM184AQ6ZMB5 413 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 VRK2Q86Y07 508 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 M1APQ8TC57 530 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 ST8SIA2Q92186 375 aa12.89□□□□□ -0.35
CSPG4-201ENST00000308508 UTP4Q969X6 686 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms