RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TMEM41BQ5BJD5 291 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 FRMPD2BQ6IN97 320 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 CENPPQ6IPU0 288 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 DPY19L4Q7Z388 723 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 C16orf62Q7Z3J2 963 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 CAMK2N1Q7Z7J9 78 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 ACOT1Q86TX2 421 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 ZNF573Q86YE8 665 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 FAM184AQ8NB25 1140 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 OR6C4Q8NGE1 309 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 OR10T2Q8NGX3 314 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 NANPQ8TBE9 248 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 PNPT1Q8TCS8 783 aaKnown RBP1.82□□□□□ -2.12
CD44-239ENST00000639002 MRPL38Q96DV4 380 aaKnown RBP1.82□□□□□ -2.12
CD44-239ENST00000639002 ULBP2Q9BZM5 246 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 C20orf85Q9H1P6 137 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 TM9SF3Q9HD45 589 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 SIRT7Q9NRC8 400 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 AGPAT5Q9NUQ2 364 aa1.82□□□□□ -2.12
CD44-239ENST00000639002 ZNHIT6Q9NWK9 470 aaKnown RBP1.82□□□□□ -2.12
CD44-239ENST00000639002 PTBP2Q9UKA9 531 aaKnown RBP1.82□□□□□ -2.12
CD44-239ENST00000639002 ARPC4-TTLL3A0A0A6YYG9 625 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 A0A1B0GWJ7 208 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 VSTM2BA6NLU5 285 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 SDHDO14521 159 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 CTAGE5O15320 804 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 WBP4O75554 376 aaKnown RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 CIB2O75838 187 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 IGLV2-23P01705 113 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 CISD3P0C7P0 127 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 EPB41P11171 864 aaKnown RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 ATP6V1B2P21281 511 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 ATP6V1C1P21283 382 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 CHI3L1P36222 383 aaPredicted RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 ATP5IP56385 69 aaPredicted RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 CCNA1P78396 465 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 IFT88Q13099 833 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 CHIT1Q13231 466 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 MXD4Q14582 209 aaPredicted RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 GNMTQ14749 295 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 ARL6IP1Q15041 203 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 LINC01620Q4KN68 170 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 CCDC137Q6PK04 289 aaKnown RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 TMIGD1Q6UXZ0 262 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 NANOGNBQ7Z5D8 188 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 NBPF5PQ86XG9 351 aaPredicted RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 CCDC50Q8IVM0 306 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 FAM133AQ8N9E0 248 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 BBOF1Q8ND07 529 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 MNS1Q8NEH6 495 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 OR5AU1Q8NGC0 362 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 OR13C2Q8NGS9 318 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 RNF139Q8WU17 664 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 MAIP1Q8WWC4 291 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 ZNF75CPQ92670 426 aaPredicted RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 DTNBP1Q96EV8 351 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 TPD52L3Q96J77 140 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 FCRL1Q96LA6 429 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 LINC00477Q96M19 166 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 TTC25Q96NG3 672 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 GSDMAQ96QA5 445 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 TAAR1Q96RJ0 339 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 HIST1H4GQ99525 98 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 ZBTB18Q99592 522 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 RHOXF2Q9BQY4 288 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 ERP44Q9BS26 406 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 GCOM2Q9BZD3 368 aaPredicted RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 SELENOIQ9C0D9 397 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 NAT10Q9H0A0 1025 aaKnown RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 NXF5Q9H1B4 397 aaKnown RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 ZNF385DQ9H6B1 395 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 PALMDQ9NP74 551 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 OR10H1Q9Y4A9 318 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 ALG6Q9Y672 507 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 V9GY05 133 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 ATP10DQ9P241 1426 aa1.81□□□□□ -2.12
CD44-239ENST00000639002 EIF4G1Q04637 1599 aaKnown RBP1.81□□□□□ -2.12
CD44-239ENST00000639002 TRANK1O15050 2925 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 IGHV2-70DA0A0C4DH43 119 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 FAM47DPA6NHR8 397 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 IDSB3KWA1 339 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 L7N2F9 121 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 HIP1O00291 1037 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 CHADO15335 359 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 PRKYO43930 277 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 NEMFO60524 1076 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 C6orf47O95873 294 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 KRT8P05787 483 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 TPM1P09493 284 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 CCDC130P13994 396 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 YWHABP31946 246 aaKnown RBP1.8□□□□□ -2.12
CD44-239ENST00000639002 CXCL5P42830 114 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 PRKXP51817 358 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 AP3M2P53677 418 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 PLA2G16P53816 162 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 SPIBQ01892 262 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 GPM6BQ13491 265 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 DDX39BQ13838 428 aaKnown RBP1.8□□□□□ -2.12
CD44-239ENST00000639002 MESDQ14696 234 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 RCN1Q15293 331 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms