RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CLIP4Q8N3C7 705 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 OR6T1Q8NGN1 323 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 CAPSLQ8WWF8 208 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 LIN37Q96GY3 246 aaPredicted RBP12.53□□□□□ -0.4
LDLR-201ENST00000252444 TGIF2Q9GZN2 237 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 GPR83Q9NYM4 423 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 COQ3Q9NZJ6 369 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SLAMF8Q9P0V8 285 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 ADAM18Q9Y3Q7 739 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 TMEM129A0AVI4 362 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 XPNPEP2O43895 674 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 GLSO94925 669 aaPredicted RBP12.53□□□□□ -0.4
LDLR-201ENST00000252444 GASTP01350 101 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 LCATP04180 440 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 HOXD4P09016 255 aaPredicted RBP12.53□□□□□ -0.4
LDLR-201ENST00000252444 CRHBPP24387 322 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 GRPRP30550 384 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 PTGER4P35408 488 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 DAPP51397 102 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 CCL11P51671 97 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 CLDN17P56750 224 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 TAS2R31P59538 309 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 ZNF169Q14929 603 aaPredicted RBP12.53□□□□□ -0.4
LDLR-201ENST00000252444 LIPKQ5VXJ0 399 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SYS1Q8N2H4 156 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SYT14Q8NB59 555 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SDR9C7Q8NEX9 313 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SLC25A37Q9NYZ2 338 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 PLXNA3P51805 1871 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 MITFO75030 526 aaPredicted RBP12.52□□□□□ -0.4
LDLR-201ENST00000252444 MAP2K4P45985 399 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 EGR3Q06889 387 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 PPP1R8Q12972 351 aaKnown RBP12.52□□□□□ -0.4
LDLR-201ENST00000252444 TBC1D28Q2M2D7 210 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 CD300LDQ6UXZ3 194 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 EXD3Q8N9H8 876 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 TEX19Q8NA77 164 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 OR13C2Q8NGS9 318 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 BOD1Q96IK1 185 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 VN1R1Q9GZP7 353 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 CMC2Q9NRP2 79 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 IGHV5-51A0A0C4DH38 117 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 ZNF806P0C7X5 589 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 PHC1P78364 1004 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 HES3Q5TGS1 186 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 KATNB1Q9BVA0 655 aa12.52□□□□□ -0.4
LDLR-201ENST00000252444 PDCD11Q14690 1871 aaKnown RBP12.52□□□□□ -0.41
LDLR-201ENST00000252444 MIA3Q5JRA6 1907 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 ETHE1O95571 254 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 MLLT10P55197 1068 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 ZNF91Q05481 1191 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 CHAF1BQ13112 559 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 ALKBH2Q6NS38 261 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 UGT2A3Q6UWM9 527 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 ZNF582Q96NG8 517 aaPredicted RBP12.52□□□□□ -0.41
LDLR-201ENST00000252444 LHX9Q9NQ69 397 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 ZNF221Q9UK13 617 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 KCNIP3Q9Y2W7 256 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 ARGFXA6NJG6 315 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 FZD7O75084 574 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 BPNT1O95861 308 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 GNAO1P09471 354 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 TMEM69Q5SWH9 247 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 NIPAL3Q6P499 406 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 FAHD1Q6P587 224 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 ZNF620Q6ZNG0 422 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 LHFPL3Q86UP9 236 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 RCBTB1Q8NDN9 531 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 TM4SF19Q96DZ7 209 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 SNX18Q96RF0 628 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 TXNIPQ9H3M7 391 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 MMP25Q9NPA2 562 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 ZNF222Q9UK12 451 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 SPATA2Q9UM82 520 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 GPR55Q9Y2T6 319 aaPredicted RBP12.52□□□□□ -0.41
LDLR-201ENST00000252444 FRMPD3Q5JV73 1810 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.52□□□□□ -0.41
LDLR-201ENST00000252444 ZNF780AO75290 641 aaPredicted RBP12.52□□□□□ -0.41
LDLR-201ENST00000252444 RAF1P04049 648 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 TNFRSF1BP20333 461 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 ACHEP22303 614 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 CCNOP22674 350 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 CHRFAM7AQ494W8 412 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 PTOV1Q86YD1 416 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 OR2V1Q8NHB1 315 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 NUDT22Q9BRQ3 303 aa12.52□□□□□ -0.41
LDLR-201ENST00000252444 A0A0X1KG70 313 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 A0A1W2PR77 199 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 CSF1P09603 554 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 CNR1P21554 472 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 SRD5A2P31213 254 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 NR4A2P43354 598 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 MAGEA2P43356 314 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 MTNR1BP49286 362 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 PPIAP62937 165 aaKnown RBP12.51□□□□□ -0.41
LDLR-201ENST00000252444 TIAL1Q01085 375 aaKnown RBP eCLIP12.51□□□□□ -0.412e-6■■■■□ 24.3
LDLR-201ENST00000252444 MEF2DQ14814 521 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 B3GNT8Q7Z7M8 397 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 ZNF321PQ8N8H1 164 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 CCDC71LQ8N9Z2 235 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms