RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ZNF800Q2TB10 664 aaPredicted RBP eCLIP22.55■■□□□ 1.2
SHMT1-207ENST00000580002 GGNQ86UU5 652 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 C8orf59Q8N0T1 100 aaPredicted RBP22.55■■□□□ 1.2
SHMT1-207ENST00000580002 CLDN22Q8N7P3 220 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 IL4I1Q96RQ9 567 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 IFT27Q9BW83 186 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 LHX6Q9UPM6 363 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 HIF3AQ9Y2N7 669 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 ADAM18Q9Y3Q7 739 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 C11orf98E9PRG8 122 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 TNFSF11O14788 317 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 SEC14L5O43304 696 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 RAMP1O60894 148 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 OR2B6P58173 313 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 SLC10A1Q14973 349 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 NADK2Q4G0N4 442 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 SLC27A4Q6P1M0 643 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 UGT2A3Q6UWM9 527 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 ASB18Q6ZVZ8 466 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 MAMDC2Q7Z304 686 aaPredicted RBP22.54■■□□□ 1.2
SHMT1-207ENST00000580002 CCDC103Q8IW40 242 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 FAM109AQ8N4B1 249 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 APH1BQ8WW43 257 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 SLC25A19Q9HC21 320 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 ENOPH1Q9UHY7 261 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 ALPK2Q86TB3 2170 aa22.54■■□□□ 1.2
SHMT1-207ENST00000580002 OR2T1O43869 369 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 PRKYO43930 277 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 TSPAN19P0C672 248 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 DIO1P49895 249 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 ERVK-25P63136 954 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 MYBPC1Q00872 1141 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 SMN1Q16637 294 aaKnown RBP22.53■■□□□ 1.2
SHMT1-207ENST00000580002 PGGHGQ32M88 737 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 CMPK2Q5EBM0 449 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 NANOGNBQ7Z5D8 188 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 THAP5Q7Z6K1 395 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 TMEM99Q8N816 258 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 OR5J2Q8NH18 312 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 ZDHHC11Q9H8X9 412 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 GPR52Q9Y2T5 361 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 SPIN1Q9Y657 262 aaPredicted RBP22.53■■□□□ 1.2
SHMT1-207ENST00000580002 DNAJC13O75165 2243 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 MS4A18H0YCH9 400 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 PLPP3O14495 311 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 NDUFB2O95178 105 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 MT-ATP6P00846 226 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 HIST1H2ABP04908 130 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 HLA-DOBP13765 273 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 BMP7P18075 431 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 MAP2K6P52564 334 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 MS4A18Q3C1V0 323 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 C5orf46Q6UWT4 87 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 PLXDC2Q6UX71 529 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 TMPPEQ6ZT21 453 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 HIST3H2AQ7L7L0 130 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 SLC25A43Q8WUT9 341 aaPredicted RBP22.53■■□□□ 1.2
SHMT1-207ENST00000580002 HIST1H2ACQ93077 130 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 SRXN1Q9BYN0 137 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 IER3IP1Q9Y5U9 82 aa22.53■■□□□ 1.2
SHMT1-207ENST00000580002 IGHV3-15A0A0B4J1V0 119 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 EIF1AYO14602 144 aaKnown RBP22.52■■□□□ 1.2
SHMT1-207ENST00000580002 IMPA2O14732 288 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 SERPINI2O75830 405 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 SMNDC1O75940 238 aaKnown RBP eCLIP22.52■■□□□ 1.2
SHMT1-207ENST00000580002 ADORA3P0DMS8 318 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 GABRB1P18505 474 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 RPL4P36578 427 aaKnown RBP22.52■■□□□ 1.2
SHMT1-207ENST00000580002 SMSP52788 366 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 PMS2P3Q13401 168 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 MAD2L1BPQ15013 274 aaPredicted RBP22.52■■□□□ 1.2
SHMT1-207ENST00000580002 C3AR1Q16581 482 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 KRT80Q6KB66 452 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 TCEANCQ8N8B7 351 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 OR2T33Q8NG76 320 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 KLHL15Q96M94 604 aa22.52■■□□□ 1.2
SHMT1-207ENST00000580002 HTR3EA5X5Y0 456 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 SULT2B1O00204 365 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 WBP4O75554 376 aaKnown RBP22.51■■□□□ 1.19
SHMT1-207ENST00000580002 PLGP00747 810 aaPredicted RBP22.51■■□□□ 1.19
SHMT1-207ENST00000580002 ZNF24P17028 368 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 POU3F2P20265 443 aaPredicted RBP22.51■■□□□ 1.19
SHMT1-207ENST00000580002 AHCYP23526 432 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 FMO3P31513 532 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 LHX2P50458 406 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 EFNB1P98172 346 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 SRYQ05066 204 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 CDK5R2Q13319 367 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 ALG10Q5BKT4 473 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 WDFY1Q8IWB7 410 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 OR52L1Q8NGH7 329 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 OR6S1Q8NH40 331 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 MIB2Q96AX9 1013 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 KATNB1Q9BVA0 655 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 TAPBPLQ9BX59 468 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 ACKR4Q9NPB9 350 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 SPRR3Q9UBC9 169 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 B3GNT3Q9Y2A9 372 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 HDGFL3Q9Y3E1 203 aa22.51■■□□□ 1.19
SHMT1-207ENST00000580002 TPRP12270 2363 aaKnown RBP22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms