RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CH25HO95992 272 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 CD14P08571 375 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 STSP08842 583 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 TSPAN19P0C672 248 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 LIPCP11150 499 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 PRKCAP17252 672 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 PCMT1P22061 227 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 FUT4P22083 530 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 CYB561P49447 251 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 DSCR4P56555 118 aaPredicted RBP7.23□□□□□ -1.25
VPS39-213ENST00000570062 SOX8P57073 446 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 GABREP78334 506 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 ZNF91Q05481 1191 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 ZP4Q12836 540 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 PMS2P3Q13401 168 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 DOC2BQ14184 412 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 IRF3Q14653 427 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 PON3Q15166 354 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 SGCBQ16585 318 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 SMN1Q16637 294 aaKnown RBP7.23□□□□□ -1.25
VPS39-213ENST00000570062 ALG10Q5BKT4 473 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 CLEC12AQ5QGZ9 265 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 ABHD17BQ5VST6 288 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 GTF2IRD2BQ6EKJ0 949 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 XAF1Q6GPH4 301 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 C3orf33Q6P1S2 294 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 TMPRSS11AQ6ZMR5 421 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 CXXC5Q7LFL8 322 aaKnown RBP7.23□□□□□ -1.25
VPS39-213ENST00000570062 TMPRSS7Q7RTY8 843 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 NANOGNBQ7Z5D8 188 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 ADCK1Q86TW2 530 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 GTF2IRD2Q86UP8 949 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 CLVS1Q8IUQ0 354 aaPredicted RBP7.23□□□□□ -1.25
VPS39-213ENST00000570062 FADS6Q8N9I5 356 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 POMGNT2Q8NAT1 580 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 CLEC1AQ8NC01 280 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 ADPRHL1Q8NDY3 354 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 OR8D4Q8NGM9 314 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 OR13C2Q8NGS9 318 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 OR4Q3Q8NH05 313 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 OR5J2Q8NH18 312 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 FNDC8Q8TC99 324 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 THAP3Q8WTV1 239 aaPredicted RBP7.23□□□□□ -1.25
VPS39-213ENST00000570062 FAR1Q8WVX9 515 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 NKD1Q969G9 470 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 UBE2FQ969M7 185 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 COG8Q96MW5 612 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 ERMAPQ96PL5 475 aaPredicted RBP7.23□□□□□ -1.25
VPS39-213ENST00000570062 TSC22D3Q99576 134 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 DOK1Q99704 481 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 PLA2G12AQ9BZM1 189 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 LHPPQ9H008 270 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 RBM38Q9H0Z9 239 aaKnown RBP7.23□□□□□ -1.25
VPS39-213ENST00000570062 DSN1Q9H410 356 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 GPN2Q9H9Y4 310 aaPredicted RBP7.23□□□□□ -1.25
VPS39-213ENST00000570062 SIAEQ9HAT2 523 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 MRPL39Q9NYK5 338 aaKnown RBP7.23□□□□□ -1.25
VPS39-213ENST00000570062 GRHPRQ9UBQ7 328 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 CHRNA9Q9UGM1 479 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 TRAPPC4Q9Y296 219 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 B3GALT5Q9Y2C3 310 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 EXOGQ9Y2C4 368 aaKnown RBP7.23□□□□□ -1.25
VPS39-213ENST00000570062 HDGFL3Q9Y3E1 203 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 NUP210LQ5VU65 1888 aa7.23□□□□□ -1.25
VPS39-213ENST00000570062 SDK1Q7Z5N4 2213 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 ASXL3Q9C0F0 2248 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 IGKV1D-42A0A075B6H8 117 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 ARPC4-TTLL3A0A0A6YYG9 625 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 A6NIZ1 184 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 H3BSA7 217 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 XKRYO14609 159 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 SLC22A1O15245 554 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 DNPH1O43598 174 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 PIP5K1CO60331 668 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 EIF1BO60739 113 aaKnown RBP7.22□□□□□ -1.25
VPS39-213ENST00000570062 NPIPB7O75200 414 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 RENP00797 406 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 MT-ND2P03891 347 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 HTR1AP08908 422 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 NR2C1P13056 603 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 ZNF17P17021 662 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 CD53P19397 219 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 CCNA2P20248 432 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 PSMB9P28065 219 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 SDHAP31040 664 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 IDUAP35475 653 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 SOX3P41225 446 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 MASP1P48740 699 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 SLC25A1P53007 311 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 RAP1BP61224 184 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 RAP1AP62834 184 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 TUBA1BP68363 451 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 HSF2Q03933 536 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 MRPL28Q13084 256 aaKnown RBP7.22□□□□□ -1.25
VPS39-213ENST00000570062 SELENBP1Q13228 472 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 ITGADQ13349 1161 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 GPR50Q13585 617 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 SPHARQ15513 63 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 TIGD6Q17RP2 521 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 NDUFAF6Q330K2 333 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms