RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 TRIM36Q9NQ86 728 aa10.88□□□□□ -0.67
PTPRN-204ENST00000423636 UGT2A1Q9Y4X1 527 aa10.88□□□□□ -0.67
PTPRN-204ENST00000423636 RIF1Q5UIP0 2472 aaKnown RBP10.88□□□□□ -0.67
PTPRN-204ENST00000423636 CACNA1HO95180 2353 aa10.88□□□□□ -0.67
PTPRN-204ENST00000423636 RALGAPA1Q6GYQ0 2036 aa10.88□□□□□ -0.67
PTPRN-204ENST00000423636 MGAQ8IWI9 3026 aa10.88□□□□□ -0.67
PTPRN-204ENST00000423636 IGHV1OR21-1A0A087WYE8 117 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 FAM240BA0A1B0GVZ2 78 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 H0YC42 278 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 PIAS2O75928 621 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 NDUFB2O95178 105 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 MT-ND5P03915 603 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 CLPSP04118 112 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 CFIP05156 583 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 HNRNPKP61978 463 aaKnown RBP eCLIP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 ZNF117Q03924 483 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 SCN1BQ07699 218 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 GALEQ14376 348 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 FGFBP1Q14512 234 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 PON3Q15166 354 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 ATAD3CQ5T2N8 411 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 TUBA3EQ6PEY2 450 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 TMPRSS11FQ6ZWK6 438 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 VASH1Q7L8A9 365 aaPredicted RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 MRGPREQ86SM8 312 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 LANCL2Q9NS86 450 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 SATB2Q9UPW6 733 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 EIF1AYO14602 144 aaKnown RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 BCAT2O15382 392 aaPredicted RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 TSC22D2O75157 780 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 RGS9O75916 674 aaPredicted RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 MAS1P04201 325 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 KRT8P05787 483 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 UBL4AP11441 157 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 GDI2P50395 445 aaKnown RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 FBXW4P57775 412 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 C19orf57Q0VDD7 668 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 PLA2G7Q13093 441 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 RAB43Q86YS6 212 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 ZNF671Q8TAW3 534 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 TRMT10AQ8TBZ6 339 aaKnown RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 DNAJA4Q8WW22 397 aaPredicted RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 ABHD1Q96SE0 405 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 LPAR4Q99677 370 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 VN1R1Q9GZP7 353 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 TRDV1A0A1B0GX56 115 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 SMAD9O15198 467 aaKnown RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 NDUFB5O43674 189 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 SRPX2O60687 465 aaPredicted RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 F10P00742 488 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 IGHA1P01876 353 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 SPI1P17947 270 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 GRK6P43250 576 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 PLCXD2Q0VAA5 305 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 RSPO4Q2I0M5 234 aaPredicted RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 LCN10Q6JVE6 187 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 SLC35F2Q8IXU6 374 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 COQ7Q99807 217 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 TBL1XR1Q9BZK7 514 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 CDCP1Q9H5V8 836 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 NEK6Q9HC98 313 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 EXOGQ9Y2C4 368 aaKnown RBP10.87□□□□□ -0.67
PTPRN-204ENST00000423636 HRH3Q9Y5N1 445 aa10.87□□□□□ -0.67
PTPRN-204ENST00000423636 CEP250Q9BV73 2442 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 SVILO95425 2214 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 A0A075B6Q4 140 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 TLCD2A6NGC4 264 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 SLC22A31A6NKX4 558 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 ENDOUP21128 410 aaKnown RBP10.86□□□□□ -0.67
PTPRN-204ENST00000423636 CCR6P51684 374 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 RPL18Q07020 188 aaKnown RBP10.86□□□□□ -0.67
PTPRN-204ENST00000423636 ALG10Q5BKT4 473 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 ZNF613Q6PF04 617 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 GID4Q8IVV7 300 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 ZNF595Q8IYB9 648 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 NPEPL1Q8NDH3 523 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 CCDC74AQ96AQ1 378 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 ADAD1Q96M93 576 aaKnown RBP10.86□□□□□ -0.67
PTPRN-204ENST00000423636 OR6C1Q96RD1 312 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 EMC6Q9BV81 110 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 SEMA4CQ9C0C4 833 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 AUNIPQ9H7T9 357 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 NOX4Q9NPH5 578 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 GMEB2Q9UKD1 530 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 LMO7DNF2Z398 122 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 PTTG1O95997 202 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 WNT11O96014 354 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 CELA2AP08217 269 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 ATF1P18846 271 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 HTR3AP46098 478 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 GABRA4P48169 554 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 ARRB1P49407 418 aaPredicted RBP10.86□□□□□ -0.67
PTPRN-204ENST00000423636 SFXN4Q6P4A7 337 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 JAZF1Q86VZ6 243 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 PCNPQ8WW12 178 aaKnown RBP10.86□□□□□ -0.67
PTPRN-204ENST00000423636 ZDHHC12Q96GR4 267 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 ZNF304Q9HCX3 659 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 MED11Q9P086 117 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 CHRNA9Q9UGM1 479 aa10.86□□□□□ -0.67
PTPRN-204ENST00000423636 ATMQ13315 3056 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms