RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	OVOL2	Q9BRP0	275 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	TRIM51	Q9BSJ1	452 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	MTG1	Q9BT17	334 aa	Predicted RBP	4.18	□□□□□ -1.74
SS18-223	ENST00000583595	THTPA	Q9BU02	230 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	SLC25A51	Q9H1U9	297 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	ADNP	Q9H2P0	1102 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	GOLPH3	Q9H4A6	298 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	EXO5	Q9H790	373 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	HMG20A	Q9NP66	347 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	UFSP2	Q9NUQ7	469 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	DUS2	Q9NX74	493 aa	Known RBP	4.18	□□□□□ -1.74
SS18-223	ENST00000583595	TEX10	Q9NXF1	929 aa	Predicted RBP	4.18	□□□□□ -1.74
SS18-223	ENST00000583595	NLGN3	Q9NZ94	848 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	ADAM28	Q9UKQ2	775 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	PSMD13	Q9UNM6	376 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	SNX24	Q9Y343	169 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	CHTOP	Q9Y3Y2	248 aa	Known RBP	4.18	□□□□□ -1.74
SS18-223	ENST00000583595	CSNK1G3	Q9Y6M4	447 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	KIF1A	Q12756	1690 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	MYO3B	Q8WXR4	1341 aa		4.18	□□□□□ -1.74
SS18-223	ENST00000583595	CPD	O75976	1380 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	SLIT2	O94813	1529 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	PIK3C2A	O00443	1686 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	LAMA4	Q16363	1823 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	KLF18	A0A0U1RQI7	1052 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	C1orf232	A0A0U1RR37	186 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	ISPD	A4D126	451 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	CD8B2	A6NJW9	211 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595		H3BMQ9	156 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595		J3QRK9	145 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	TOR1A	O14656	332 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	CLPX	O76031	633 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	OPN1LW	P04000	364 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	RPLP0	P05388	317 aa	Known RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	ALPI	P09923	528 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	DBT	P11182	482 aa	Known RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	ICAM2	P13598	275 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	HPCAL1	P37235	193 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	CAPG	P40121	348 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	CASP4	P49662	377 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	PGF	P49763	221 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	TPMT	P51580	245 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	ARHGDIB	P52566	201 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	COPZ1	P61923	177 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	CAV1	Q03135	178 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	CSTF1	Q05048	431 aa	Known RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	TRIP13	Q15645	432 aa	Predicted RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	ALX1	Q15699	326 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	UBE2V2	Q15819	145 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	LRRC36	Q1X8D7	754 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	RFTN2	Q52LD8	501 aa	Predicted RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	PDZK1	Q5T2W1	519 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	LRRC66	Q68CR7	880 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	OR2A2	Q6IF42	318 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	RHBDD2	Q6NTF9	364 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	ZFP1	Q6P2D0	407 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	BHLHB9	Q6PI77	547 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	DOK6	Q6PKX4	331 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	RBMS3	Q6XE24	437 aa	Known RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	TMEM184A	Q6ZMB5	413 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	PLEKHG7	Q6ZR37	379 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	NIPA1	Q7RTP0	329 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	NAGS	Q8N159	534 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	METTL27	Q8N6F8	245 aa	Predicted RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	CCNYL1	Q8N7R7	359 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595		Q8N9G6	341 aa	Predicted RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	POC1A	Q8NBT0	407 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	LRRC20	Q8TCA0	184 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	FBXO25	Q8TCJ0	367 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	TMIGD2	Q96BF3	282 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	TMEM80	Q96HE8	168 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	B3GALT6	Q96L58	329 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	CPXM1	Q96SM3	734 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	KRTAP1-5	Q9BYS1	174 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	CDC42EP4	Q9H3Q1	356 aa	Known RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	IKZF5	Q9H5V7	419 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	MCCC2	Q9HCC0	563 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	TIGAR	Q9NQ88	270 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	ZC4H2	Q9NQZ6	224 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	DCAF13	Q9NV06	445 aa	Known RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	PCYOX1	Q9UHG3	505 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	ZNF639	Q9UID6	485 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	PURG	Q9UJV8	347 aa	Known RBP	4.17	□□□□□ -1.74
SS18-223	ENST00000583595	ZNF221	Q9UK13	617 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	PIGL	Q9Y2B2	252 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	CACNG2	Q9Y698	323 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	MROH5	Q6ZUA9	1318 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	DLG5	Q8TDM6	1919 aa		4.17	□□□□□ -1.74
SS18-223	ENST00000583595	PSME4	Q14997	1843 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	SLIT3	O75094	1523 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	C4A	P0C0L4	1744 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	C4B	P0C0L5	1744 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	PARP4	Q9UKK3	1724 aa	Known RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	CRB1	P82279	1406 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595		A0A1W2PR80	420 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	FBLL1	A6NHQ2	334 aa	Known RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	C12orf71	A8MTZ7	269 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	PRSS44	E7EML9	344 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595		I3L4J1	428 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	CYB561D2	O14569	222 aa		4.16	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms