RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	GAA1	P39012	614 aa		6.6	□□□□□ -1.35
RPT3	YDR394W	CIN4	P39110	191 aa		6.6	□□□□□ -1.35
RPT3	YDR394W	YEL076C	P39971	216 aa		6.6	□□□□□ -1.35
RPT3	YDR394W	SHQ1	P40486	507 aa	Predicted RBP	6.6	□□□□□ -1.35
RPT3	YDR394W	EFM4	P40516	257 aa		6.6	□□□□□ -1.35
RPT3	YDR394W	SOL4	P53315	255 aa		6.6	□□□□□ -1.35
RPT3	YDR394W	YNR040W	P53736	256 aa		6.6	□□□□□ -1.35
RPT3	YDR394W	SEC5	P89102	971 aa		6.6	□□□□□ -1.35
RPT3	YDR394W	HEH2	Q03281	663 aa		6.6	□□□□□ -1.35
RPT3	YDR394W	OYE2	Q03558	400 aa	Known RBP	6.6	□□□□□ -1.35
RPT3	YDR394W	TDA6	Q06466	467 aa		6.6	□□□□□ -1.35
RPT3	YDR394W	YLH47	Q06493	454 aa		6.6	□□□□□ -1.35
RPT3	YDR394W	QCR6	P00127	147 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	TOP1	P04786	769 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	MTF2	P10849	440 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	6.59	□□□□□ -1.35	not detected
RPT3	YDR394W	SRB4	P32569	687 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	NCL1	P38205	684 aa	Known RBP	6.59	□□□□□ -1.35
RPT3	YDR394W	TPS3	P38426	1054 aa	Known RBP	6.59	□□□□□ -1.35
RPT3	YDR394W	TIF4631	P39935	952 aa	Known RBP	6.59	□□□□□ -1.35
RPT3	YDR394W	SEC9	P40357	651 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	PRP31	P49704	494 aa	Predicted RBP	6.59	□□□□□ -1.35
RPT3	YDR394W	YNR014W	P53719	212 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	BOP3	P53958	396 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	RBA50	Q04418	439 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	AIM33	Q04516	312 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	VAC14	Q06708	880 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	YOL075C	Q08234	1294 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	LAP2	Q10740	671 aa		6.59	□□□□□ -1.35
RPT3	YDR394W	SPO12	P17123	173 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	CDC60	P26637	1090 aa	Known RBP	6.58	□□□□□ -1.36
RPT3	YDR394W	APL1	P27351	700 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	REI1	P38344	393 aa	Predicted RBP	6.58	□□□□□ -1.36
RPT3	YDR394W	SUL1	P38359	859 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	APM2	P38700	605 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	SMC2	P38989	1170 aa	Known RBP	6.58	□□□□□ -1.36
RPT3	YDR394W	PRK1	P40494	810 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	HUL4	P40985	892 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	SMC3	P47037	1230 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	VID30	P53076	958 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	UME1	Q03010	460 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	OPY2	Q06810	360 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	SPO75	Q07798	868 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	TCO89	Q08921	799 aa		6.58	□□□□□ -1.36
RPT3	YDR394W	CWC2	Q12046	339 aa	Predicted RBP	6.58	□□□□□ -1.36
RPT3	YDR394W	TUB2	P02557	457 aa	Known RBP	6.57	□□□□□ -1.36
RPT3	YDR394W	PPR1	P07272	904 aa	Predicted RBP	6.57	□□□□□ -1.36
RPT3	YDR394W	SSB1	P11484	613 aa	Known RBP	6.57	□□□□□ -1.36
RPT3	YDR394W	CKI1	P20485	582 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	HXT1	P32465	570 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	RPC25	P35718	212 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	BYE1	P36106	594 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	SSB2	P40150	613 aa	Known RBP	6.57	□□□□□ -1.36
RPT3	YDR394W	FMS1	P50264	508 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	GUP1	P53154	560 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	SUE1	Q06524	206 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	DAS2	Q12084	232 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	GIN4	Q12263	1142 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	MED1	Q12321	566 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	YPR053C	Q6Q5F3	151 aa		6.57	□□□□□ -1.36
RPT3	YDR394W	ILV1	P00927	576 aa	Known RBP	6.56	□□□□□ -1.36
RPT3	YDR394W	PFK1	P16861	987 aa	Known RBP	6.56	□□□□□ -1.36
RPT3	YDR394W	RPO26	P20435	155 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	RAD57	P25301	460 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	UGA4	P32837	571 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	CNS1	P33313	385 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	STV1	P37296	890 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	BSD2	P38356	321 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	SIP3	P38717	1229 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	DYS1	P38791	387 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	KEL1	P38853	1164 aa	Known RBP	6.56	□□□□□ -1.36
RPT3	YDR394W	CCT4	P39078	528 aa	Known RBP	6.56	□□□□□ -1.36
RPT3	YDR394W	NIT1	P40447	199 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	TOS3	P43637	560 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	CNM67	P53865	581 aa	Known RBP	6.56	□□□□□ -1.36
RPT3	YDR394W	TRM44	Q02648	567 aa	Known RBP	6.56	□□□□□ -1.36
RPT3	YDR394W	NGL3	Q03210	505 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	PNP1	Q05788	311 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	YPL216W	Q08964	1102 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	OSH2	Q12451	1283 aa		6.56	□□□□□ -1.36
RPT3	YDR394W	TOM70	P07213	617 aa	Known RBP	6.55	□□□□□ -1.36
RPT3	YDR394W	NFU1	P32860	256 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	PGM1	P33401	570 aa	Known RBP	6.55	□□□□□ -1.36
RPT3	YDR394W	PPS1	P38148	807 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	SDS3	P40505	327 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	IES1	P43579	692 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	CCM1	P48237	864 aa	Predicted RBP	6.55	□□□□□ -1.36
RPT3	YDR394W	VPS4	P52917	437 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	YGR117C	P53270	476 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	PGA2	P53903	129 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	ORC4	P54791	529 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	ATG23	Q06671	453 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	YPR078C	Q06813	372 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	OXR1	Q08952	273 aa		6.55	□□□□□ -1.36
RPT3	YDR394W	PCK1	P10963	549 aa		6.54	□□□□□ -1.36
RPT3	YDR394W	KTR2	P33550	425 aa		6.54	□□□□□ -1.36
RPT3	YDR394W	LDH1	P38139	375 aa		6.54	□□□□□ -1.36
RPT3	YDR394W	PHO88	P38264	188 aa	Predicted RBP	6.54	□□□□□ -1.36
RPT3	YDR394W	PIH1	P38768	344 aa		6.54	□□□□□ -1.36
RPT3	YDR394W	LSB3	P43603	459 aa	Known RBP	6.54	□□□□□ -1.36

Retrieved 100 of 5,963 RNA–protein pairs in 43.2 ms