RNA–Protein interactions for RNA: ENST00000635273.1

SMARCA2-238, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, human

TSL 5

Gene SMARCA2, Length 672 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA2-238	ENST00000635273	SPG7	Q9UQ90	795 aa		10.36	□□□□□ -0.75
SMARCA2-238	ENST00000635273	SOS2	Q07890	1332 aa	Predicted RBP	10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	GRN	P28799	593 aa	Known RBP	10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	RAD51AP2	Q09MP3	1159 aa		10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	SCARF1	Q14162	830 aa		10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	NAALADL2	Q58DX5	795 aa		10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	NT5DC4	Q86YG4	428 aa		10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	SNX29	Q8TEQ0	813 aa		10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	CCDC74A	Q96AQ1	378 aa		10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	ELP3	Q9H9T3	547 aa		10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	ZFYVE28	Q9HCC9	887 aa		10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	SHROOM4	Q9ULL8	1493 aa		10.35	□□□□□ -0.75
SMARCA2-238	ENST00000635273	CTSH	P09668	335 aa		10.34	□□□□□ -0.75
SMARCA2-238	ENST00000635273	TYRO3	Q06418	890 aa		10.34	□□□□□ -0.75
SMARCA2-238	ENST00000635273	RNF34	Q969K3	372 aa		10.34	□□□□□ -0.75
SMARCA2-238	ENST00000635273	CEP63	Q96MT8	703 aa		10.34	□□□□□ -0.75
SMARCA2-238	ENST00000635273	CRISPLD1	Q9H336	500 aa		10.34	□□□□□ -0.75
SMARCA2-238	ENST00000635273	BMP1	P13497	986 aa		10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	EPB42	P16452	691 aa		10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	ZNF76	P36508	570 aa		10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	GSK3A	P49840	483 aa		10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	RASSF7	Q02833	373 aa		10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	TRIM46	Q7Z4K8	759 aa		10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	EPS8L3	Q8TE67	593 aa	Known RBP	10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	SREK1	Q8WXA9	508 aa	Known RBP	10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	CRELD1	Q96HD1	420 aa		10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	GPAM	Q9HCL2	828 aa		10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	TMEM63C	Q9P1W3	806 aa		10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	GJA3	Q9Y6H8	435 aa		10.33	□□□□□ -0.76
SMARCA2-238	ENST00000635273	PHACTR2	O75167	634 aa		10.32	□□□□□ -0.76
SMARCA2-238	ENST00000635273	EIF4B	P23588	611 aa	Known RBP	10.32	□□□□□ -0.76
SMARCA2-238	ENST00000635273	IRS1	P35568	1242 aa		10.32	□□□□□ -0.76
SMARCA2-238	ENST00000635273	PI16	Q6UXB8	463 aa		10.32	□□□□□ -0.76
SMARCA2-238	ENST00000635273	DRC1	Q96MC2	740 aa		10.32	□□□□□ -0.76
SMARCA2-238	ENST00000635273	RUBCNL	Q9H714	662 aa		10.32	□□□□□ -0.76
SMARCA2-238	ENST00000635273	XYLB	O75191	536 aa		10.31	□□□□□ -0.76
SMARCA2-238	ENST00000635273	XP32	Q5T750	250 aa		10.31	□□□□□ -0.76
SMARCA2-238	ENST00000635273	OSBPL7	Q9BZF2	842 aa		10.31	□□□□□ -0.76
SMARCA2-238	ENST00000635273	NLRP2	Q9NX02	1062 aa		10.31	□□□□□ -0.76
SMARCA2-238	ENST00000635273	DYRK1B	Q9Y463	629 aa		10.31	□□□□□ -0.76
SMARCA2-238	ENST00000635273	GIPC1	O14908	333 aa		10.3	□□□□□ -0.76
SMARCA2-238	ENST00000635273	IGHA1	P01876	353 aa		10.3	□□□□□ -0.76
SMARCA2-238	ENST00000635273	F11	P03951	625 aa		10.3	□□□□□ -0.76
SMARCA2-238	ENST00000635273	ZFP42	Q96MM3	310 aa		10.3	□□□□□ -0.76
SMARCA2-238	ENST00000635273	EGFR	P00533	1210 aa		10.29	□□□□□ -0.76
SMARCA2-238	ENST00000635273	NLRP8	Q86W28	1048 aa		10.29	□□□□□ -0.76
SMARCA2-238	ENST00000635273	PGBD3	Q8N328	593 aa		10.29	□□□□□ -0.76
SMARCA2-238	ENST00000635273	ZCCHC2	Q9C0B9	1178 aa	Known RBP	10.29	□□□□□ -0.76
SMARCA2-238	ENST00000635273	CHRD	Q9H2X0	955 aa		10.29	□□□□□ -0.76
SMARCA2-238	ENST00000635273	C12orf49	Q9H741	205 aa		10.29	□□□□□ -0.76
SMARCA2-238	ENST00000635273	C11orf16	Q9NQ32	467 aa		10.29	□□□□□ -0.76
SMARCA2-238	ENST00000635273	CNTN3	Q9P232	1028 aa		10.29	□□□□□ -0.76
SMARCA2-238	ENST00000635273	POLR3D	P05423	398 aa	Predicted RBP	10.28	□□□□□ -0.76
SMARCA2-238	ENST00000635273	SAMD5	Q5TGI4	173 aa		10.28	□□□□□ -0.76
SMARCA2-238	ENST00000635273	C1orf127	Q8N9H9	656 aa		10.28	□□□□□ -0.76
SMARCA2-238	ENST00000635273	GAS2L1	Q99501	681 aa	Predicted RBP	10.28	□□□□□ -0.76
SMARCA2-238	ENST00000635273	TGIF2	Q9GZN2	237 aa		10.28	□□□□□ -0.76
SMARCA2-238	ENST00000635273	BRD7	Q9NPI1	651 aa		10.28	□□□□□ -0.76
SMARCA2-238	ENST00000635273	DNMT3L	Q9UJW3	386 aa		10.28	□□□□□ -0.76
SMARCA2-238	ENST00000635273	VSIG8	P0DPA2	414 aa		10.27	□□□□□ -0.77
SMARCA2-238	ENST00000635273	NLRP13	Q86W25	1043 aa		10.27	□□□□□ -0.77
SMARCA2-238	ENST00000635273	NPHS2	Q9NP85	383 aa		10.27	□□□□□ -0.77
SMARCA2-238	ENST00000635273	ABI2	Q9NYB9	513 aa	Predicted RBP	10.27	□□□□□ -0.77
SMARCA2-238	ENST00000635273	EREG	O14944	169 aa		10.26	□□□□□ -0.77
SMARCA2-238	ENST00000635273	GALNT12	Q8IXK2	581 aa		10.26	□□□□□ -0.77
SMARCA2-238	ENST00000635273	SENP3-EIF4A1	A0A087X0R7	540 aa		10.25	□□□□□ -0.77
SMARCA2-238	ENST00000635273	KCNQ4	P56696	695 aa		10.25	□□□□□ -0.77
SMARCA2-238	ENST00000635273	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	10.25	□□□□□ -0.77	4e-6	■□□□□ 10.9
SMARCA2-238	ENST00000635273	FAM8A1	Q9UBU6	413 aa		10.25	□□□□□ -0.77
SMARCA2-238	ENST00000635273	SF3A1	Q15459	793 aa	Known RBP	10.24	□□□□□ -0.77
SMARCA2-238	ENST00000635273	EFHC2	Q5JST6	749 aa		10.24	□□□□□ -0.77
SMARCA2-238	ENST00000635273	TTC39B	Q5VTQ0	682 aa	Predicted RBP	10.24	□□□□□ -0.77
SMARCA2-238	ENST00000635273	NXPE4	Q6UWF7	544 aa		10.24	□□□□□ -0.77
SMARCA2-238	ENST00000635273	PMEPA1	Q969W9	287 aa		10.24	□□□□□ -0.77
SMARCA2-238	ENST00000635273	CCSER2	Q9H7U1	834 aa		10.24	□□□□□ -0.77
SMARCA2-238	ENST00000635273	KCNH4	Q9UQ05	1017 aa		10.24	□□□□□ -0.77
SMARCA2-238	ENST00000635273	USP31	Q70CQ4	1352 aa		10.24	□□□□□ -0.77
SMARCA2-238	ENST00000635273	TINF2	Q9BSI4	451 aa		10.23	□□□□□ -0.77
SMARCA2-238	ENST00000635273	BCO2	Q9BYV7	579 aa		10.23	□□□□□ -0.77
SMARCA2-238	ENST00000635273	SRCIN1	Q9C0H9	1055 aa		10.23	□□□□□ -0.77
SMARCA2-238	ENST00000635273	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	10.23	□□□□□ -0.77
SMARCA2-238	ENST00000635273	GADD45B	O75293	160 aa	Predicted RBP	10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	SASH3	O75995	380 aa		10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	USP17L7	P0C7H9	530 aa		10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	CES1	P23141	567 aa		10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	PTPN12	Q05209	780 aa	Known RBP	10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	LBR	Q14739	615 aa	Known RBP	10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	MEI1	Q5TIA1	1274 aa		10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	GPAT2	Q6NUI2	795 aa		10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	ACBD3	Q9H3P7	528 aa		10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	PPP1R1B	Q9UD71	204 aa	Predicted RBP	10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	RB1CC1	Q8TDY2	1594 aa		10.22	□□□□□ -0.77
SMARCA2-238	ENST00000635273	ATXN7	O15265	892 aa	Predicted RBP	10.21	□□□□□ -0.77
SMARCA2-238	ENST00000635273	EFS	O43281	561 aa		10.21	□□□□□ -0.77
SMARCA2-238	ENST00000635273	THBS1	P07996	1170 aa		10.21	□□□□□ -0.77
SMARCA2-238	ENST00000635273	FAM157B	P0CG42	384 aa		10.21	□□□□□ -0.77
SMARCA2-238	ENST00000635273	SFSWAP	Q12872	951 aa	Known RBP	10.21	□□□□□ -0.77
SMARCA2-238	ENST00000635273	GRM2	Q14416	872 aa		10.21	□□□□□ -0.77
SMARCA2-238	ENST00000635273	TAF1C	Q15572	869 aa	Predicted RBP	10.21	□□□□□ -0.77

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