RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PUF60Q9UHX1 559 aaKnown RBP13.12□□□□□ -0.31
CLIP1-219ENST00000620786 UHRF1BP1Q6BDS2 1440 aa13.12□□□□□ -0.31
CLIP1-219ENST00000620786 PPFIA3O75145 1194 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 IL15P40933 162 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-219ENST00000620786 TDRD12Q587J7 1177 aaKnown RBP13.11□□□□□ -0.31
CLIP1-219ENST00000620786 FSIP1Q8NA03 581 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 GJA3Q9Y6H8 435 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 TRPM2O94759 1503 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 ZMYM3Q14202 1370 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 MTHFSDQ2M296 383 aaKnown RBP13.11□□□□□ -0.31
CLIP1-219ENST00000620786 ERMNQ8TAM6 284 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 NUP88Q99567 741 aaPredicted RBP13.11□□□□□ -0.31
CLIP1-219ENST00000620786 ALDH1L1O75891 902 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 CNNM2Q9H8M5 875 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 LEKR1Q6ZMV7 388 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 ANKRD2Q9GZV1 360 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 UBA7P41226 1012 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 SMARCC2Q8TAQ2 1214 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 LRRC27Q9C0I9 530 aa13.11□□□□□ -0.31
CLIP1-219ENST00000620786 GCP02774 474 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 DCAF5Q96JK2 942 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 CCDC183Q5T5S1 534 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 CCNL1Q9UK58 526 aaPredicted RBP13.1□□□□□ -0.31
CLIP1-219ENST00000620786 ABCC10Q5T3U5 1492 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 MACROD2A1Z1Q3 448 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 TNNT1P13805 278 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 TRAPPC8Q9Y2L5 1435 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 MAP3K5Q99683 1374 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 KLF18A0A0U1RQI7 1052 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 PRC1O43663 620 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 TTC22Q5TAA0 569 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 PYM1Q9BRP8 204 aaKnown RBP13.1□□□□□ -0.31
CLIP1-219ENST00000620786 ASXL1Q8IXJ9 1541 aa13.1□□□□□ -0.31
CLIP1-219ENST00000620786 TOP1P11387 765 aaKnown RBP13.09□□□□□ -0.31
CLIP1-219ENST00000620786 KCNA6P17658 529 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 SLC9C2Q5TAH2 1124 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 PANK2Q9BZ23 570 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 MMRN2Q9H8L6 949 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 CTNNA2P26232 953 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 TAF3Q5VWG9 929 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 CCDC174Q6PII3 467 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 NPATQ14207 1427 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 EIF3JO75822 258 aaKnown RBP13.09□□□□□ -0.31
CLIP1-219ENST00000620786 CTAGE5O15320 804 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 MCM4P33991 863 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 DNA2P51530 1060 aa13.09□□□□□ -0.31
CLIP1-219ENST00000620786 B4DLN1 442 aa13.08□□□□□ -0.31
CLIP1-219ENST00000620786 ZBTB43O43298 467 aa13.08□□□□□ -0.31
CLIP1-219ENST00000620786 PLCG2P16885 1265 aa13.08□□□□□ -0.31
CLIP1-219ENST00000620786 TNNI2P48788 182 aa13.08□□□□□ -0.31
CLIP1-219ENST00000620786 MRPL12P52815 198 aaKnown RBP13.08□□□□□ -0.31
CLIP1-219ENST00000620786 MEIS3Q99687 375 aa13.08□□□□□ -0.31
CLIP1-219ENST00000620786 RTN1Q16799 776 aa13.08□□□□□ -0.32
CLIP1-219ENST00000620786 TBC1D9Q6ZT07 1266 aa13.08□□□□□ -0.32
CLIP1-219ENST00000620786 FAM114A1Q8IWE2 563 aa13.08□□□□□ -0.32
CLIP1-219ENST00000620786 HELBQ8NG08 1087 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-219ENST00000620786 CPLX3Q8WVH0 158 aa13.08□□□□□ -0.32
CLIP1-219ENST00000620786 CDCA7Q9BWT1 371 aaPredicted RBP13.08□□□□□ -0.32
CLIP1-219ENST00000620786 YEATS4O95619 227 aa13.08□□□□□ -0.32
CLIP1-219ENST00000620786 SFPQP23246 707 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLIP1-219ENST00000620786 CNBD1Q8NA66 436 aa13.08□□□□□ -0.32
CLIP1-219ENST00000620786 EXOC1Q9NV70 894 aa13.08□□□□□ -0.32
CLIP1-219ENST00000620786 NAPAP54920 295 aa13.08□□□□□ -0.32
CLIP1-219ENST00000620786 HOXC9P31274 260 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 TMTC2Q8N394 836 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 JAG2Q9Y219 1238 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 LDHBP07195 334 aaKnown RBP13.07□□□□□ -0.32
CLIP1-219ENST00000620786 CALM1P0DP23 149 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 CALM2P0DP24 149 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 CALM3P0DP25 149 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 BIN2Q9UBW5 565 aaPredicted RBP13.07□□□□□ -0.32
CLIP1-219ENST00000620786 NBPF7P0C2Y1 421 aaPredicted RBP13.07□□□□□ -0.32
CLIP1-219ENST00000620786 MAP3K9P80192 1104 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 MCMDC2Q4G0Z9 681 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 MAGEB6Q8N7X4 407 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 PAG1Q9NWQ8 432 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 ZSCAN12O43309 604 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 GNAQP50148 359 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 MCM9Q9NXL9 1143 aa13.07□□□□□ -0.32
CLIP1-219ENST00000620786 BIN1O00499 593 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 RNMTO43148 476 aaKnown RBP13.06□□□□□ -0.32
CLIP1-219ENST00000620786 KIF5CO60282 957 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 USO1O60763 962 aaKnown RBP13.06□□□□□ -0.32
CLIP1-219ENST00000620786 MIGA1Q8NAN2 632 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 TFIP11Q9UBB9 837 aaKnown RBP13.06□□□□□ -0.32
CLIP1-219ENST00000620786 CASQ1P31415 396 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 NUP153P49790 1475 aaKnown RBP13.06□□□□□ -0.32
CLIP1-219ENST00000620786 C8orf58Q8NAV2 365 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 GOPCQ9HD26 462 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 PA2G4Q9UQ80 394 aaKnown RBP13.06□□□□□ -0.32
CLIP1-219ENST00000620786 UGGT2Q9NYU1 1516 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 CTTNBP2Q8WZ74 1663 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 GSTTP1A0A1W2PQM5 241 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 KANK3Q6NY19 840 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 SKAP1Q86WV1 359 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 BRF1Q92994 677 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 LRRC2Q9BYS8 371 aa13.06□□□□□ -0.32
CLIP1-219ENST00000620786 GNAT2P19087 354 aa13.05□□□□□ -0.32
CLIP1-219ENST00000620786 FAM98CQ17RN3 349 aaKnown RBP13.05□□□□□ -0.32
CLIP1-219ENST00000620786 RRP36Q96EU6 259 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms