RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	KRTAP4-5	Q9BYR2	181 aa		4.62	□□□□□ -1.67
PTCH1-223	ENST00000551623	MRPL18	Q9H0U6	180 aa	Known RBP	4.62	□□□□□ -1.67
PTCH1-223	ENST00000551623	SNRK	Q9NRH2	765 aa		4.62	□□□□□ -1.67
PTCH1-223	ENST00000551623	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	4.62	□□□□□ -1.67
PTCH1-223	ENST00000551623	GAPVD1	Q14C86	1478 aa		4.62	□□□□□ -1.67
PTCH1-223	ENST00000551623	C8A	P07357	584 aa		4.61	□□□□□ -1.67
PTCH1-223	ENST00000551623	PLAUR	Q03405	335 aa		4.61	□□□□□ -1.67
PTCH1-223	ENST00000551623	PCSK7	Q16549	785 aa		4.61	□□□□□ -1.67
PTCH1-223	ENST00000551623		Q6ZS46	218 aa		4.61	□□□□□ -1.67
PTCH1-223	ENST00000551623	GSX2	Q9BZM3	304 aa		4.61	□□□□□ -1.67
PTCH1-223	ENST00000551623	PHACTR1	Q9C0D0	580 aa		4.61	□□□□□ -1.67
PTCH1-223	ENST00000551623	STOML1	Q9UBI4	398 aa		4.61	□□□□□ -1.67
PTCH1-223	ENST00000551623	TBC1D2B	Q9UPU7	963 aa		4.61	□□□□□ -1.67
PTCH1-223	ENST00000551623	SYNJ1	O43426	1573 aa		4.61	□□□□□ -1.67
PTCH1-223	ENST00000551623	DNMBP	Q6XZF7	1577 aa		4.61	□□□□□ -1.67
PTCH1-223	ENST00000551623	NFKB1	P19838	968 aa		4.6	□□□□□ -1.67
PTCH1-223	ENST00000551623	HIRA	P54198	1017 aa	Predicted RBP	4.6	□□□□□ -1.67
PTCH1-223	ENST00000551623	PERM1	Q5SV97	790 aa		4.6	□□□□□ -1.67
PTCH1-223	ENST00000551623	BTLA	Q7Z6A9	289 aa		4.6	□□□□□ -1.67
PTCH1-223	ENST00000551623	TNS4	Q8IZW8	715 aa		4.6	□□□□□ -1.67
PTCH1-223	ENST00000551623	TTC9	Q92623	222 aa		4.6	□□□□□ -1.67
PTCH1-223	ENST00000551623	HCN4	Q9Y3Q4	1203 aa		4.6	□□□□□ -1.67
PTCH1-223	ENST00000551623	AQR	O60306	1485 aa	Known RBP eCLIP	4.6	□□□□□ -1.67
PTCH1-223	ENST00000551623	MAGI1	Q96QZ7	1491 aa	Predicted RBP	4.6	□□□□□ -1.67
PTCH1-223	ENST00000551623	PRDM2	Q13029	1718 aa		4.6	□□□□□ -1.67
PTCH1-223	ENST00000551623	WIZ	O95785	1651 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	TOP2A	P11388	1531 aa	Known RBP	4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	GLB1	P16278	677 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	PSMA6	P60900	246 aa	Known RBP	4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	GTF2I	P78347	998 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	PSME1	Q06323	249 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	VAC14	Q08AM6	782 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	IRF5	Q13568	498 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	CCIN	Q13939	588 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	EML3	Q32P44	896 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	ELMSAN1	Q6PJG2	1045 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	POTEA	Q6S8J7	498 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	POU5F2	Q8N7G0	328 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	CHMP3	Q9Y3E7	222 aa		4.59	□□□□□ -1.67
PTCH1-223	ENST00000551623	ERCC6L2	Q5T890	1561 aa		4.58	□□□□□ -1.68
PTCH1-223	ENST00000551623	SYNJ2	O15056	1496 aa		4.58	□□□□□ -1.68
PTCH1-223	ENST00000551623	POLA1	P09884	1462 aa	Predicted RBP	4.58	□□□□□ -1.68
PTCH1-223	ENST00000551623	PRR19	A6NJB7	356 aa		4.58	□□□□□ -1.68
PTCH1-223	ENST00000551623	NFIA	Q12857	509 aa		4.58	□□□□□ -1.68
PTCH1-223	ENST00000551623	AGGF1	Q8N302	714 aa	eCLIP	4.58	□□□□□ -1.68
PTCH1-223	ENST00000551623	NOD1	Q9Y239	953 aa		4.58	□□□□□ -1.68
PTCH1-223	ENST00000551623	ZBTB42	B2RXF5	422 aa		4.57	□□□□□ -1.68
PTCH1-223	ENST00000551623	DHX15	O43143	795 aa	Known RBP	4.57	□□□□□ -1.68
PTCH1-223	ENST00000551623	ARMC10	Q8N2F6	343 aa		4.57	□□□□□ -1.68
PTCH1-223	ENST00000551623	UBL7	Q96S82	380 aa	Predicted RBP	4.57	□□□□□ -1.68
PTCH1-223	ENST00000551623	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	4.57	□□□□□ -1.68
PTCH1-223	ENST00000551623	SNAPC4	Q5SXM2	1469 aa		4.56	□□□□□ -1.68
PTCH1-223	ENST00000551623	HIF1A	Q16665	826 aa		4.56	□□□□□ -1.68
PTCH1-223	ENST00000551623	DHX32	Q7L7V1	743 aa	Known RBP	4.56	□□□□□ -1.68
PTCH1-223	ENST00000551623	ABI1	Q8IZP0	508 aa		4.56	□□□□□ -1.68
PTCH1-223	ENST00000551623	TRPM4	Q8TD43	1214 aa		4.56	□□□□□ -1.68
PTCH1-223	ENST00000551623	DBNDD2	Q9BQY9	259 aa		4.56	□□□□□ -1.68
PTCH1-223	ENST00000551623	SMG9	Q9H0W8	520 aa	Known RBP	4.56	□□□□□ -1.68
PTCH1-223	ENST00000551623	SRA1	Q9HD15	236 aa	Known RBP	4.56	□□□□□ -1.68
PTCH1-223	ENST00000551623	PRM3	Q9NNZ6	103 aa		4.56	□□□□□ -1.68
PTCH1-223	ENST00000551623	ABCC10	Q5T3U5	1492 aa		4.56	□□□□□ -1.68
PTCH1-223	ENST00000551623	PIK3CD	O00329	1044 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	MAP3K6	O95382	1288 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	GPLD1	P80108	840 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	MLLT1	Q03111	559 aa	Predicted RBP	4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	SEMA3F	Q13275	785 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	RNF43	Q68DV7	783 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	ALDH16A1	Q8IZ83	802 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	DCAF11	Q8TEB1	546 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	ASIC4	Q96FT7	647 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	KRTAP17-1	Q9BYP8	105 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	C7orf69	Q9H7B7	122 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	KIF13A	Q9H1H9	1805 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	GRIN2B	Q13224	1484 aa		4.55	□□□□□ -1.68
PTCH1-223	ENST00000551623	LZTS3	O60299	673 aa	Predicted RBP	4.54	□□□□□ -1.68
PTCH1-223	ENST00000551623	FBLN7	Q53RD9	439 aa		4.54	□□□□□ -1.68
PTCH1-223	ENST00000551623	IER5	Q5VY09	327 aa		4.54	□□□□□ -1.68
PTCH1-223	ENST00000551623	MAP4K3	Q8IVH8	894 aa		4.54	□□□□□ -1.68
PTCH1-223	ENST00000551623	TRIM42	Q8IWZ5	723 aa		4.54	□□□□□ -1.68
PTCH1-223	ENST00000551623	FBXO41	Q8TF61	875 aa		4.54	□□□□□ -1.68
PTCH1-223	ENST00000551623	MAPKBP1	O60336	1514 aa		4.54	□□□□□ -1.68
PTCH1-223	ENST00000551623	SHROOM2	Q13796	1616 aa		4.54	□□□□□ -1.68
PTCH1-223	ENST00000551623	HMX2	A2RU54	273 aa		4.53	□□□□□ -1.68
PTCH1-223	ENST00000551623	NCOA4	Q13772	614 aa		4.53	□□□□□ -1.68
PTCH1-223	ENST00000551623	SETDB1	Q15047	1291 aa		4.53	□□□□□ -1.68
PTCH1-223	ENST00000551623	UVSSA	Q2YD98	709 aa		4.53	□□□□□ -1.68
PTCH1-223	ENST00000551623	KRT25	Q7Z3Z0	450 aa		4.53	□□□□□ -1.68
PTCH1-223	ENST00000551623	UTP4	Q969X6	686 aa	Known RBP	4.53	□□□□□ -1.68
PTCH1-223	ENST00000551623	ZFAT	Q9P243	1243 aa		4.53	□□□□□ -1.68
PTCH1-223	ENST00000551623	NUP160	Q12769	1436 aa		4.53	□□□□□ -1.68
PTCH1-223	ENST00000551623	HECW2	Q9P2P5	1572 aa		4.53	□□□□□ -1.69
PTCH1-223	ENST00000551623	TDRD9	Q8NDG6	1382 aa	Known RBP	4.53	□□□□□ -1.69
PTCH1-223	ENST00000551623	SKI	P12755	728 aa		4.52	□□□□□ -1.69
PTCH1-223	ENST00000551623	EPB42	P16452	691 aa		4.52	□□□□□ -1.69
PTCH1-223	ENST00000551623	EIF2AK2	P19525	551 aa	Known RBP	4.52	□□□□□ -1.69
PTCH1-223	ENST00000551623	GRN	P28799	593 aa	Known RBP	4.52	□□□□□ -1.69
PTCH1-223	ENST00000551623	SOX11	P35716	441 aa		4.52	□□□□□ -1.69
PTCH1-223	ENST00000551623	HFE2	Q6ZVN8	426 aa		4.52	□□□□□ -1.69
PTCH1-223	ENST00000551623	CBLL1	Q75N03	491 aa		4.52	□□□□□ -1.69

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