RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 DCDC2BA2VCK2 349 aa8.14□□□□□ -1.11
LIMA1-205ENST00000550592 EFCC1Q9HA90 598 aa8.14□□□□□ -1.11
LIMA1-205ENST00000550592 STRN4Q9NRL3 753 aa8.14□□□□□ -1.11
LIMA1-205ENST00000550592 IGSF5Q9NSI5 407 aa8.14□□□□□ -1.11
LIMA1-205ENST00000550592 MARK1Q9P0L2 795 aa8.14□□□□□ -1.11
LIMA1-205ENST00000550592 ATXN7L1Q9ULK2 861 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-205ENST00000550592 PPFIA3O75145 1194 aa8.13□□□□□ -1.11
LIMA1-205ENST00000550592 DAB2P98082 770 aa8.13□□□□□ -1.11
LIMA1-205ENST00000550592 XPCQ01831 940 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-205ENST00000550592 MRPL58Q14197 206 aaKnown RBP8.13□□□□□ -1.11
LIMA1-205ENST00000550592 TMC4Q7Z404 712 aa8.13□□□□□ -1.11
LIMA1-205ENST00000550592 PMEPA1Q969W9 287 aa8.13□□□□□ -1.11
LIMA1-205ENST00000550592 GTPBP3Q969Y2 492 aaKnown RBP8.13□□□□□ -1.11
LIMA1-205ENST00000550592 ABI2Q9NYB9 513 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-205ENST00000550592 CNTN3Q9P232 1028 aa8.13□□□□□ -1.11
LIMA1-205ENST00000550592 PHACTR2O75167 634 aa8.12□□□□□ -1.11
LIMA1-205ENST00000550592 SASH3O75995 380 aa8.12□□□□□ -1.11
LIMA1-205ENST00000550592 TARSP26639 723 aaKnown RBP8.12□□□□□ -1.11
LIMA1-205ENST00000550592 TTC39BQ5VTQ0 682 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-205ENST00000550592 USPL1Q5W0Q7 1092 aa8.12□□□□□ -1.11
LIMA1-205ENST00000550592 ABHD17AQ96GS6 310 aa8.12□□□□□ -1.11
LIMA1-205ENST00000550592 FRMD6Q96NE9 622 aa8.12□□□□□ -1.11
LIMA1-205ENST00000550592 CHRDQ9H2X0 955 aa8.12□□□□□ -1.11
LIMA1-205ENST00000550592 RNF19AQ9NV58 838 aa8.12□□□□□ -1.11
LIMA1-205ENST00000550592 PHF24Q9UPV7 400 aa8.12□□□□□ -1.11
LIMA1-205ENST00000550592 ITGAEP38570 1179 aa8.11□□□□□ -1.11
LIMA1-205ENST00000550592 GRIN2CQ14957 1233 aa8.11□□□□□ -1.11
LIMA1-205ENST00000550592 FAM182BQ5T319 152 aa8.11□□□□□ -1.11
LIMA1-205ENST00000550592 C1orf127Q8N9H9 656 aa8.11□□□□□ -1.11
LIMA1-205ENST00000550592 NANOS1Q8WY41 292 aaKnown RBP8.11□□□□□ -1.11
LIMA1-205ENST00000550592 CCDC74AQ96AQ1 378 aa8.11□□□□□ -1.11
LIMA1-205ENST00000550592 MAP3K6O95382 1288 aa8.1□□□□□ -1.11
LIMA1-205ENST00000550592 GNA15P30679 374 aa8.1□□□□□ -1.11
LIMA1-205ENST00000550592 SPEM2Q0P670 501 aa8.1□□□□□ -1.11
LIMA1-205ENST00000550592 FOXR1Q6PIV2 292 aa8.1□□□□□ -1.11
LIMA1-205ENST00000550592 OR13H1Q8NG92 308 aa8.1□□□□□ -1.11
LIMA1-205ENST00000550592 ZFATQ9P243 1243 aa8.1□□□□□ -1.11
LIMA1-205ENST00000550592 POTECB2RU33 542 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 SORBS3O60504 671 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 MMP20O60882 483 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 CD33P20138 364 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 PSMD2Q13200 908 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 SV2AQ7L0J3 742 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 KRT25Q7Z3Z0 450 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 GALNT12Q8IXK2 581 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 VWA5B2Q8N398 1253 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 FAM161BQ96MY7 647 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 TRERF1Q96PN7 1200 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 SLC30A3Q99726 388 aa8.09□□□□□ -1.11
LIMA1-205ENST00000550592 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-205ENST00000550592 GIPC1O14908 333 aa8.08□□□□□ -1.12
LIMA1-205ENST00000550592 EREGO14944 169 aa8.08□□□□□ -1.12
LIMA1-205ENST00000550592 RECKO95980 971 aa8.08□□□□□ -1.12
LIMA1-205ENST00000550592 RARAP10276 462 aa8.08□□□□□ -1.12
LIMA1-205ENST00000550592 FGFR3P22607 806 aa8.08□□□□□ -1.12
LIMA1-205ENST00000550592 CES1P23141 567 aa8.08□□□□□ -1.12
LIMA1-205ENST00000550592 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.08□□□□□ -1.12
LIMA1-205ENST00000550592 EPS8L3Q8TE67 593 aaKnown RBP8.08□□□□□ -1.12
LIMA1-205ENST00000550592 PNMA5Q96PV4 448 aa8.08□□□□□ -1.12
LIMA1-205ENST00000550592 BACH2Q9BYV9 841 aa8.08□□□□□ -1.12
LIMA1-205ENST00000550592 TLR7Q9NYK1 1049 aaKnown RBP8.08□□□□□ -1.12
LIMA1-205ENST00000550592 AK5Q9Y6K8 562 aa8.08□□□□□ -1.12
LIMA1-205ENST00000550592 CYP2E1P05181 493 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-205ENST00000550592 POLR3DP05423 398 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-205ENST00000550592 HOXD8P13378 290 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-205ENST00000550592 NFKB1P19838 968 aa8.07□□□□□ -1.12
LIMA1-205ENST00000550592 SOX18P35713 384 aa8.07□□□□□ -1.12
LIMA1-205ENST00000550592 VEGFBP49765 207 aa8.07□□□□□ -1.12
LIMA1-205ENST00000550592 CTBSQ01459 385 aa8.07□□□□□ -1.12
LIMA1-205ENST00000550592 LDLRAD1Q5T700 205 aa8.07□□□□□ -1.12
LIMA1-205ENST00000550592 MRS2Q9HD23 443 aa8.07□□□□□ -1.12
LIMA1-205ENST00000550592 NLRP2Q9NX02 1062 aa8.07□□□□□ -1.12
LIMA1-205ENST00000550592 SPG7Q9UQ90 795 aa8.07□□□□□ -1.12
LIMA1-205ENST00000550592 CDC14CA4D256 554 aa8.06□□□□□ -1.12
LIMA1-205ENST00000550592 IRS1P35568 1242 aa8.06□□□□□ -1.12
LIMA1-205ENST00000550592 BHMTQ93088 406 aa8.06□□□□□ -1.12
LIMA1-205ENST00000550592 SALL4Q9UJQ4 1053 aa8.06□□□□□ -1.12
LIMA1-205ENST00000550592 GPR25O00155 361 aa8.05□□□□□ -1.12
LIMA1-205ENST00000550592 PSAPP07602 524 aa8.05□□□□□ -1.12
LIMA1-205ENST00000550592 TCF3P15923 654 aa8.05□□□□□ -1.12
LIMA1-205ENST00000550592 NEUROD1Q13562 356 aa8.05□□□□□ -1.12
LIMA1-205ENST00000550592 TSNAXIP1Q2TAA8 658 aa8.05□□□□□ -1.12
LIMA1-205ENST00000550592 PI16Q6UXB8 463 aa8.05□□□□□ -1.12
LIMA1-205ENST00000550592 OSBPL7Q9BZF2 842 aa8.05□□□□□ -1.12
LIMA1-205ENST00000550592 NPHS2Q9NP85 383 aa8.05□□□□□ -1.12
LIMA1-205ENST00000550592 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-205ENST00000550592 PHF20L1A8MW92 1017 aa8.04□□□□□ -1.12
LIMA1-205ENST00000550592 KIF4AO95239 1232 aa8.04□□□□□ -1.12
LIMA1-205ENST00000550592 EDN3P14138 238 aa8.04□□□□□ -1.12
LIMA1-205ENST00000550592 PLAURQ03405 335 aa8.04□□□□□ -1.12
LIMA1-205ENST00000550592 KIAA0319Q5VV43 1072 aa8.04□□□□□ -1.12
LIMA1-205ENST00000550592 NPAS3Q8IXF0 933 aa8.04□□□□□ -1.12
LIMA1-205ENST00000550592 NXF1Q9UBU9 619 aaKnown RBP8.04□□□□□ -1.12
LIMA1-205ENST00000550592 VTI1BQ9UEU0 232 aa8.04□□□□□ -1.12
LIMA1-205ENST00000550592 C2CD2LO14523 706 aa8.03□□□□□ -1.12
LIMA1-205ENST00000550592 EIF4BP23588 611 aaKnown RBP8.03□□□□□ -1.12
LIMA1-205ENST00000550592 PEAR1Q5VY43 1037 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-205ENST00000550592 DHX32Q7L7V1 743 aaKnown RBP8.03□□□□□ -1.12
LIMA1-205ENST00000550592 RAB44Q7Z6P3 723 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-205ENST00000550592 SRCIN1Q9C0H9 1055 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms