RNA–Protein interactions for RNA: ENST00000513525.1

CCL28-203, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best) BASIC

Gene CCL28, Length 1,518 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-203ENST00000513525 CCDC93Q567U6 631 aa12.82□□□□□ -0.36
CCL28-203ENST00000513525 L3MBTL3Q96JM7 780 aaPredicted RBP12.82□□□□□ -0.36
CCL28-203ENST00000513525 TAF1P21675 1872 aa12.81□□□□□ -0.36
CCL28-203ENST00000513525 SNED1Q8TER0 1413 aa12.81□□□□□ -0.36
CCL28-203ENST00000513525 CACNA1FO60840 1977 aa12.81□□□□□ -0.36
CCL28-203ENST00000513525 EIF2S2P20042 333 aaKnown RBP12.81□□□□□ -0.36
CCL28-203ENST00000513525 APLP1P51693 650 aa12.81□□□□□ -0.36
CCL28-203ENST00000513525 EMP3P54852 163 aa12.81□□□□□ -0.36
CCL28-203ENST00000513525 PARP10Q53GL7 1025 aa12.81□□□□□ -0.36
CCL28-203ENST00000513525 PCDHB8Q9UN66 801 aa12.81□□□□□ -0.36
CCL28-203ENST00000513525 NTSR2O95665 410 aa12.8□□□□□ -0.36
CCL28-203ENST00000513525 HOXB7P09629 217 aa12.8□□□□□ -0.36
CCL28-203ENST00000513525 VEGFAP15692 232 aaPredicted RBP12.8□□□□□ -0.36
CCL28-203ENST00000513525 GPTP24298 496 aa12.8□□□□□ -0.36
CCL28-203ENST00000513525 PROSER3Q2NL68 480 aa12.8□□□□□ -0.36
CCL28-203ENST00000513525 ERFEQ4G0M1 354 aa12.8□□□□□ -0.36
CCL28-203ENST00000513525 SUSD4Q5VX71 490 aa12.8□□□□□ -0.36
CCL28-203ENST00000513525 DPY19L2Q6NUT2 758 aa12.8□□□□□ -0.36
CCL28-203ENST00000513525 NUTM1Q86Y26 1132 aa12.8□□□□□ -0.36
CCL28-203ENST00000513525 RNF123Q5XPI4 1314 aa12.79□□□□□ -0.36
CCL28-203ENST00000513525 PPP1R42Q7Z4L9 355 aa12.79□□□□□ -0.36
CCL28-203ENST00000513525 CFAP44Q96MT7 982 aa12.79□□□□□ -0.36
CCL28-203ENST00000513525 DDX21Q9NR30 783 aaKnown RBP eCLIP12.79□□□□□ -0.36
CCL28-203ENST00000513525 ANXA1P04083 346 aa12.78□□□□□ -0.36
CCL28-203ENST00000513525 HOXA10P31260 410 aaPredicted RBP12.78□□□□□ -0.36
CCL28-203ENST00000513525 FKBP4Q02790 459 aaKnown RBP eCLIP12.78□□□□□ -0.36
CCL28-203ENST00000513525 MKRN3Q13064 507 aaKnown RBP12.78□□□□□ -0.36
CCL28-203ENST00000513525 KRT24Q2M2I5 525 aa12.78□□□□□ -0.36
CCL28-203ENST00000513525 CCDC184Q52MB2 194 aa12.78□□□□□ -0.36
CCL28-203ENST00000513525 RTKN2Q8IZC4 609 aa12.78□□□□□ -0.36
CCL28-203ENST00000513525 LRRC37AA6NMS7 1700 aa12.78□□□□□ -0.36
CCL28-203ENST00000513525 POTECB2RU33 542 aa12.78□□□□□ -0.36
CCL28-203ENST00000513525 HNRNPUQ00839 825 aaKnown RBP eCLIP12.78□□□□□ -0.36
CCL28-203ENST00000513525 HSP90AB3PQ58FF7 597 aa12.78□□□□□ -0.36
CCL28-203ENST00000513525 COPS6Q7L5N1 327 aa12.78□□□□□ -0.36
CCL28-203ENST00000513525 ZNF467Q7Z7K2 595 aaPredicted RBP12.78□□□□□ -0.36
CCL28-203ENST00000513525 SMC1BQ8NDV3 1235 aa12.78□□□□□ -0.36
CCL28-203ENST00000513525 LAS1LQ9Y4W2 734 aaKnown RBP12.78□□□□□ -0.36
CCL28-203ENST00000513525 MYH3P11055 1940 aa12.77□□□□□ -0.37
CCL28-203ENST00000513525 ADAMTSL1Q8N6G6 1762 aa12.77□□□□□ -0.37
CCL28-203ENST00000513525 APAF1O14727 1248 aa12.77□□□□□ -0.37
CCL28-203ENST00000513525 ZNF853P0CG23 659 aa12.77□□□□□ -0.37
CCL28-203ENST00000513525 CC2D2BQ6DHV5 1058 aa12.77□□□□□ -0.37
CCL28-203ENST00000513525 XAGE3Q8WTP9 111 aa12.77□□□□□ -0.37
CCL28-203ENST00000513525 NECTIN2Q92692 538 aa12.77□□□□□ -0.37
CCL28-203ENST00000513525 RPGRQ92834 1020 aaKnown RBP12.77□□□□□ -0.37
CCL28-203ENST00000513525 CRAMP1Q96RY5 1269 aa12.77□□□□□ -0.37
CCL28-203ENST00000513525 CALD1Q05682 793 aaKnown RBP12.76□□□□□ -0.37
CCL28-203ENST00000513525 GRIPAP1Q4V328 841 aa12.76□□□□□ -0.37
CCL28-203ENST00000513525 SLC10A5Q5PT55 438 aa12.76□□□□□ -0.37
CCL28-203ENST00000513525 HDGFL1Q5TGJ6 251 aa12.76□□□□□ -0.37
CCL28-203ENST00000513525 PSMD1Q99460 953 aa12.76□□□□□ -0.37
CCL28-203ENST00000513525 UTP14AQ9BVJ6 771 aaKnown RBP12.76□□□□□ -0.37
CCL28-203ENST00000513525 CHPF2Q9P2E5 772 aa12.76□□□□□ -0.37
CCL28-203ENST00000513525 AIMP1Q12904 312 aaKnown RBP12.75□□□□□ -0.37
CCL28-203ENST00000513525 TCIRG1Q13488 830 aa12.75□□□□□ -0.37
CCL28-203ENST00000513525 OLFM4Q6UX06 510 aa12.75□□□□□ -0.37
CCL28-203ENST00000513525 DNAJC5GQ8N7S2 189 aa12.75□□□□□ -0.37
CCL28-203ENST00000513525 RBM17Q96I25 401 aaKnown RBP12.75□□□□□ -0.37
CCL28-203ENST00000513525 MBIPQ9NS73 344 aa12.75□□□□□ -0.37
CCL28-203ENST00000513525 IFT57Q9NWB7 429 aa12.75□□□□□ -0.37
CCL28-203ENST00000513525 DBF4Q9UBU7 674 aaPredicted RBP12.75□□□□□ -0.37
CCL28-203ENST00000513525 GNAI1P63096 354 aa12.74□□□□□ -0.37
CCL28-203ENST00000513525 DUSP27Q5VZP5 1158 aa12.74□□□□□ -0.37
CCL28-203ENST00000513525 NLRP10Q86W26 655 aa12.74□□□□□ -0.37
CCL28-203ENST00000513525 PDCD7Q8N8D1 485 aaKnown RBP12.74□□□□□ -0.37
CCL28-203ENST00000513525 PLBD2Q8NHP8 589 aa12.74□□□□□ -0.37
CCL28-203ENST00000513525 NLRP3Q96P20 1036 aa12.74□□□□□ -0.37
CCL28-203ENST00000513525 COL4A5P29400 1685 aa12.74□□□□□ -0.37
CCL28-203ENST00000513525 ZBED9Q6R2W3 1325 aa12.74□□□□□ -0.37
CCL28-203ENST00000513525 DDNO94850 711 aaPredicted RBP12.73□□□□□ -0.37
CCL28-203ENST00000513525 IARSP41252 1262 aaKnown RBP12.73□□□□□ -0.37
CCL28-203ENST00000513525 FAM9BQ8IZU0 186 aa12.73□□□□□ -0.37
CCL28-203ENST00000513525 SYNE4Q8N205 404 aa12.73□□□□□ -0.37
CCL28-203ENST00000513525 ZNF277Q9NRM2 450 aaPredicted RBP12.73□□□□□ -0.37
CCL28-203ENST00000513525 HYPKQ9NX55 129 aa12.73□□□□□ -0.37
CCL28-203ENST00000513525 PPEF1O14829 653 aaPredicted RBP12.72□□□□□ -0.37
CCL28-203ENST00000513525 GSE1Q14687 1217 aa12.72□□□□□ -0.37
CCL28-203ENST00000513525 FBXO3Q9UK99 471 aa12.72□□□□□ -0.37
CCL28-203ENST00000513525 PCNTO95613 3336 aa12.72□□□□□ -0.37
CCL28-203ENST00000513525 LTBP1Q14766 1721 aa12.72□□□□□ -0.37
CCL28-203ENST00000513525 IQCA1LA6NCM1 817 aa12.72□□□□□ -0.37
CCL28-203ENST00000513525 FZD9O00144 591 aa12.72□□□□□ -0.37
CCL28-203ENST00000513525 ANKRD13DQ6ZTN6 518 aa12.72□□□□□ -0.37
CCL28-203ENST00000513525 TRPM7Q96QT4 1865 aa12.71□□□□□ -0.37
CCL28-203ENST00000513525 ABCC4O15439 1325 aa12.71□□□□□ -0.37
CCL28-203ENST00000513525 SH3TC1Q8TE82 1336 aa12.71□□□□□ -0.37
CCL28-203ENST00000513525 ZNF541Q9H0D2 1346 aa12.71□□□□□ -0.37
CCL28-203ENST00000513525 ISCA1Q9BUE6 129 aa12.71□□□□□ -0.38
CCL28-203ENST00000513525 TRMT112Q9UI30 125 aaKnown RBP12.71□□□□□ -0.38
CCL28-203ENST00000513525 CCDC27Q2M243 656 aa12.7□□□□□ -0.38
CCL28-203ENST00000513525 ATP6V0A2Q9Y487 856 aa12.7□□□□□ -0.38
CCL28-203ENST00000513525 DUOX1Q9NRD9 1551 aa12.7□□□□□ -0.38
CCL28-203ENST00000513525 PSME4Q14997 1843 aa12.69□□□□□ -0.38
CCL28-203ENST00000513525 SPEF2Q9C093 1822 aa12.69□□□□□ -0.38
CCL28-203ENST00000513525 HCLS1P14317 486 aaPredicted RBP12.69□□□□□ -0.38
CCL28-203ENST00000513525 TRIM28Q13263 835 aaKnown RBP12.69□□□□□ -0.38
CCL28-203ENST00000513525 GPC2Q8N158 579 aa12.69□□□□□ -0.38
CCL28-203ENST00000513525 JDP2Q8WYK2 163 aa12.69□□□□□ -0.38
CCL28-203ENST00000513525 KLRG1Q96E93 195 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms