RNA–Protein interactions for RNA: ENST00000436177.5

VPS50-203, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-203ENST00000436177 GRIPAP1Q4V328 841 aa10.15□□□□□ -0.78
VPS50-203ENST00000436177 PPP1R42Q7Z4L9 355 aa10.15□□□□□ -0.78
VPS50-203ENST00000436177 C7orf43Q8WVR3 580 aa10.15□□□□□ -0.78
VPS50-203ENST00000436177 RBM17Q96I25 401 aaKnown RBP10.15□□□□□ -0.78
VPS50-203ENST00000436177 HACL1Q9UJ83 578 aa10.15□□□□□ -0.78
VPS50-203ENST00000436177 LAMB4A4D0S4 1761 aa10.15□□□□□ -0.78
VPS50-203ENST00000436177 ZNF541Q9H0D2 1346 aa10.14□□□□□ -0.79
VPS50-203ENST00000436177 CRY2Q49AN0 593 aa10.14□□□□□ -0.79
VPS50-203ENST00000436177 OLFM4Q6UX06 510 aa10.14□□□□□ -0.79
VPS50-203ENST00000436177 SYNE4Q8N205 404 aa10.14□□□□□ -0.79
VPS50-203ENST00000436177 PSMD1Q99460 953 aa10.14□□□□□ -0.79
VPS50-203ENST00000436177 TAF1DQ9H5J8 278 aaPredicted RBP10.14□□□□□ -0.79
VPS50-203ENST00000436177 SLX4Q8IY92 1834 aa10.14□□□□□ -0.79
VPS50-203ENST00000436177 MYBBP1AQ9BQG0 1328 aaKnown RBP10.13□□□□□ -0.79
VPS50-203ENST00000436177 POTECB2RU33 542 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 PPEF1O14829 653 aaPredicted RBP10.13□□□□□ -0.79
VPS50-203ENST00000436177 EPHX2P34913 555 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 NEUROD2Q15784 382 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 HSP90AB3PQ58FF7 597 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 GIGYF2Q6Y7W6 1299 aaKnown RBP10.13□□□□□ -0.79
VPS50-203ENST00000436177 PNMA8AQ86V59 439 aaPredicted RBP10.13□□□□□ -0.79
VPS50-203ENST00000436177 TNS4Q8IZW8 715 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 LARGE2Q8N3Y3 721 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 NLRP3Q96P20 1036 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 UTP14AQ9BVJ6 771 aaKnown RBP10.13□□□□□ -0.79
VPS50-203ENST00000436177 BABAM1Q9NWV8 329 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 MKRN1Q9UHC7 482 aaKnown RBP10.13□□□□□ -0.79
VPS50-203ENST00000436177 GJA3Q9Y6H8 435 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 RIC1Q4ADV7 1423 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 FER1L6Q2WGJ9 1857 aa10.13□□□□□ -0.79
VPS50-203ENST00000436177 RNF123Q5XPI4 1314 aa10.12□□□□□ -0.79
VPS50-203ENST00000436177 UBN2Q6ZU65 1347 aa10.12□□□□□ -0.79
VPS50-203ENST00000436177 G3V3G9 751 aa10.12□□□□□ -0.79
VPS50-203ENST00000436177 TCERG1O14776 1098 aaKnown RBP10.12□□□□□ -0.79
VPS50-203ENST00000436177 HSPA1AP0DMV8 641 aaKnown RBP10.12□□□□□ -0.79
VPS50-203ENST00000436177 HSPA1BP0DMV9 641 aaKnown RBP10.12□□□□□ -0.79
VPS50-203ENST00000436177 HOXA10P31260 410 aaPredicted RBP10.12□□□□□ -0.79
VPS50-203ENST00000436177 TMPOP42166 694 aaKnown RBP10.12□□□□□ -0.79
VPS50-203ENST00000436177 EMP3P54852 163 aa10.12□□□□□ -0.79
VPS50-203ENST00000436177 SUSD4Q5VX71 490 aa10.12□□□□□ -0.79
VPS50-203ENST00000436177 NIM1KQ8IY84 436 aa10.12□□□□□ -0.79
VPS50-203ENST00000436177 GPC2Q8N158 579 aa10.12□□□□□ -0.79
VPS50-203ENST00000436177 NECTIN2Q92692 538 aa10.12□□□□□ -0.79
VPS50-203ENST00000436177 AIDAQ96BJ3 306 aa10.12□□□□□ -0.79
VPS50-203ENST00000436177 CRAMP1Q96RY5 1269 aa10.12□□□□□ -0.79
VPS50-203ENST00000436177 LAS1LQ9Y4W2 734 aaKnown RBP10.12□□□□□ -0.79
VPS50-203ENST00000436177 KDM3BQ7LBC6 1761 aa10.11□□□□□ -0.79
VPS50-203ENST00000436177 ARFGEF2Q9Y6D5 1785 aa10.11□□□□□ -0.79
VPS50-203ENST00000436177 NTSR2O95665 410 aa10.11□□□□□ -0.79
VPS50-203ENST00000436177 AIMP1Q12904 312 aaKnown RBP10.11□□□□□ -0.79
VPS50-203ENST00000436177 DDX10Q13206 875 aaKnown RBP10.11□□□□□ -0.79
VPS50-203ENST00000436177 CCDC146Q8IYE0 955 aa10.11□□□□□ -0.79
VPS50-203ENST00000436177 ZNF34Q8IZ26 560 aa10.11□□□□□ -0.79
VPS50-203ENST00000436177 CACNA1SQ13698 1873 aa10.1□□□□□ -0.79
VPS50-203ENST00000436177 TMEM88BA6NKF7 163 aa10.1□□□□□ -0.79
VPS50-203ENST00000436177 FZD9O00144 591 aa10.1□□□□□ -0.79
VPS50-203ENST00000436177 PPIP5K2O43314 1243 aa10.1□□□□□ -0.79
VPS50-203ENST00000436177 COL13A1Q5TAT6 717 aaPredicted RBP10.1□□□□□ -0.79
VPS50-203ENST00000436177 SUPT20HQ8NEM7 779 aa10.1□□□□□ -0.79
VPS50-203ENST00000436177 CCDC88AQ3V6T2 1871 aa10.09□□□□□ -0.79
VPS50-203ENST00000436177 ANXA1P04083 346 aa10.09□□□□□ -0.79
VPS50-203ENST00000436177 PROSER3Q2NL68 480 aa10.09□□□□□ -0.79
VPS50-203ENST00000436177 HDGFL1Q5TGJ6 251 aa10.09□□□□□ -0.79
VPS50-203ENST00000436177 DPP8Q6V1X1 898 aaPredicted RBP10.09□□□□□ -0.79
VPS50-203ENST00000436177 DDX46Q7L014 1031 aaKnown RBP10.09□□□□□ -0.79
VPS50-203ENST00000436177 COPS6Q7L5N1 327 aa10.09□□□□□ -0.79
VPS50-203ENST00000436177 XAGE3Q8WTP9 111 aa10.09□□□□□ -0.79
VPS50-203ENST00000436177 RUNDC1Q96C34 613 aa10.09□□□□□ -0.79
VPS50-203ENST00000436177 DDX21Q9NR30 783 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS50-203ENST00000436177 TRMT112Q9UI30 125 aaKnown RBP10.09□□□□□ -0.79
VPS50-203ENST00000436177 ABT1Q9ULW3 272 aaKnown RBP10.09□□□□□ -0.79
VPS50-203ENST00000436177 CNTNAP1P78357 1384 aa10.09□□□□□ -0.79
VPS50-203ENST00000436177 DICER1Q9UPY3 1922 aaKnown RBP10.09□□□□□ -0.79
VPS50-203ENST00000436177 SH3TC1Q8TE82 1336 aa10.08□□□□□ -0.8
VPS50-203ENST00000436177 PDIA6Q15084 440 aa10.08□□□□□ -0.8
VPS50-203ENST00000436177 CNTROBQ8N137 903 aa10.08□□□□□ -0.8
VPS50-203ENST00000436177 BOLA1Q9Y3E2 137 aa10.08□□□□□ -0.8
VPS50-203ENST00000436177 ATP6V0A2Q9Y487 856 aa10.08□□□□□ -0.8
VPS50-203ENST00000436177 PASKQ96RG2 1323 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 DLG5Q8TDM6 1919 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 PCNTO95613 3336 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 BBOX1O75936 387 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 HOXB7P09629 217 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 HCLS1P14317 486 aaPredicted RBP10.07□□□□□ -0.8
VPS50-203ENST00000436177 CALD1Q05682 793 aaKnown RBP10.07□□□□□ -0.8
VPS50-203ENST00000436177 AOC3Q16853 763 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 MAP1SQ66K74 1059 aaPredicted RBP10.07□□□□□ -0.8
VPS50-203ENST00000436177 PAXIP1Q6ZW49 1069 aaPredicted RBP10.07□□□□□ -0.8
VPS50-203ENST00000436177 NLRP10Q86W26 655 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 SPNS2Q8IVW8 549 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 MPNDQ8N594 471 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 VPS33BQ9H267 617 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 CHPF2Q9P2E5 772 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 DBF4Q9UBU7 674 aaPredicted RBP10.07□□□□□ -0.8
VPS50-203ENST00000436177 ABCC4O15439 1325 aa10.07□□□□□ -0.8
VPS50-203ENST00000436177 SCN4AP35499 1836 aa10.06□□□□□ -0.8
VPS50-203ENST00000436177 FAM205CA6NFA0 338 aa10.06□□□□□ -0.8
VPS50-203ENST00000436177 CHL1O00533 1208 aa10.06□□□□□ -0.8
VPS50-203ENST00000436177 HSP90B1P14625 803 aaKnown RBP10.06□□□□□ -0.8
VPS50-203ENST00000436177 MMRN1Q13201 1228 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms