RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 CFAP74Q9C0B2 1584 aa19.99■□□□□ 0.79
PHRF1-202ENST00000413872 VPS36Q86VN1 386 aa19.98■□□□□ 0.79
PHRF1-202ENST00000413872 SLC4A4Q9Y6R1 1079 aa19.98■□□□□ 0.79
PHRF1-202ENST00000413872 TMEM2Q9UHN6 1383 aa19.98■□□□□ 0.79
PHRF1-202ENST00000413872 KANK3Q6NY19 840 aa19.98■□□□□ 0.79
PHRF1-202ENST00000413872 CNNM3Q8NE01 707 aa19.98■□□□□ 0.79
PHRF1-202ENST00000413872 TSPY3P0CV98 308 aa19.98■□□□□ 0.79
PHRF1-202ENST00000413872 TSPY8P0CW00 308 aa19.98■□□□□ 0.79
PHRF1-202ENST00000413872 CCDC148Q8NFR7 591 aa19.98■□□□□ 0.79
PHRF1-202ENST00000413872 ZSCAN16Q9H4T2 348 aaPredicted RBP19.98■□□□□ 0.79
PHRF1-202ENST00000413872 FILIP1Q7Z7B0 1213 aa19.98■□□□□ 0.79
PHRF1-202ENST00000413872 STX8Q9UNK0 236 aa19.98■□□□□ 0.79
PHRF1-202ENST00000413872 STX6O43752 255 aa19.97■□□□□ 0.79
PHRF1-202ENST00000413872 SDSP20132 328 aa19.97■□□□□ 0.79
PHRF1-202ENST00000413872 GJB2P29033 226 aa19.97■□□□□ 0.79
PHRF1-202ENST00000413872 RBM27Q9P2N5 1060 aaKnown RBP19.97■□□□□ 0.79
PHRF1-202ENST00000413872 TAF4BQ92750 862 aa19.97■□□□□ 0.79
PHRF1-202ENST00000413872 IGHDP01880 384 aa19.97■□□□□ 0.79
PHRF1-202ENST00000413872 CCDC112Q8NEF3 446 aa19.97■□□□□ 0.79
PHRF1-202ENST00000413872 SLC9C2Q5TAH2 1124 aa19.96■□□□□ 0.79
PHRF1-202ENST00000413872 ZBTB43O43298 467 aa19.96■□□□□ 0.79
PHRF1-202ENST00000413872 PAXIP1Q6ZW49 1069 aaPredicted RBP19.96■□□□□ 0.79
PHRF1-202ENST00000413872 ERLIN1O75477 346 aa19.96■□□□□ 0.79
PHRF1-202ENST00000413872 ARHGAP29Q52LW3 1261 aa19.96■□□□□ 0.79
PHRF1-202ENST00000413872 TRAPPC3LQ5T215 181 aa19.96■□□□□ 0.79
PHRF1-202ENST00000413872 KIAA1328Q86T90 577 aa19.96■□□□□ 0.79
PHRF1-202ENST00000413872 UBA7P41226 1012 aa19.96■□□□□ 0.79
PHRF1-202ENST00000413872 JAKMIP3Q5VZ66 844 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 SLC26A6Q9BXS9 759 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 PAG1Q9NWQ8 432 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 KIF2AO00139 706 aaPredicted RBP19.95■□□□□ 0.78
PHRF1-202ENST00000413872 CETN1Q12798 172 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 SYCE3A1L190 88 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 FSIP1Q8NA03 581 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 GOLGA6L10A6NI86 522 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 CAMK4Q16566 473 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 CCDC150Q8NCX0 1101 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 PHACTR3Q96KR7 559 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 TBC1D2Q9BYX2 928 aa19.95■□□□□ 0.78
PHRF1-202ENST00000413872 SFPQP23246 707 aaKnown RBP eCLIP19.94■□□□□ 0.788e-6■■■■□ 25.1
PHRF1-202ENST00000413872 IFIT1BQ5T764 474 aaKnown RBP19.94■□□□□ 0.78
PHRF1-202ENST00000413872 KLF18A0A0U1RQI7 1052 aa19.94■□□□□ 0.78
PHRF1-202ENST00000413872 SPA17Q15506 151 aa19.94■□□□□ 0.78
PHRF1-202ENST00000413872 JDP2Q8WYK2 163 aa19.94■□□□□ 0.78
PHRF1-202ENST00000413872 VAT1LQ9HCJ6 419 aa19.94■□□□□ 0.78
PHRF1-202ENST00000413872 ESYT1Q9BSJ8 1104 aa19.94■□□□□ 0.78
PHRF1-202ENST00000413872 UBA5Q9GZZ9 404 aa19.94■□□□□ 0.78
PHRF1-202ENST00000413872 RBM25P49756 843 aaKnown RBP19.94■□□□□ 0.78
PHRF1-202ENST00000413872 ZNF790Q6PG37 636 aa19.94■□□□□ 0.78
PHRF1-202ENST00000413872 CALM1P0DP23 149 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 CALM2P0DP24 149 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 CALM3P0DP25 149 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 TSHZ3Q63HK5 1081 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 DCTPP1Q9H773 170 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 BRPF3Q9ULD4 1205 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 CACNA2D4Q7Z3S7 1137 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 VSIG10Q8N0Z9 540 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 PLBD2Q8NHP8 589 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 BRF1Q92994 677 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 MAGEB6P1A0A0J9YX57 407 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 PLEKHG3A1L390 1219 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 CAVIN2O95810 425 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 KLHL10Q6JEL2 608 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 ERMNQ8TAM6 284 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 RBM8AQ9Y5S9 174 aaKnown RBP19.93■□□□□ 0.78
PHRF1-202ENST00000413872 SAMD9Q5K651 1589 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 TBC1D32Q96NH3 1257 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 ORAI2Q96SN7 254 aa19.93■□□□□ 0.78
PHRF1-202ENST00000413872 NF2P35240 595 aa19.92■□□□□ 0.78
PHRF1-202ENST00000413872 NSFL1CQ9UNZ2 370 aaKnown RBP19.92■□□□□ 0.78
PHRF1-202ENST00000413872 PCDHB15Q9Y5E8 787 aa19.92■□□□□ 0.78
PHRF1-202ENST00000413872 RTN1Q16799 776 aa19.92■□□□□ 0.78
PHRF1-202ENST00000413872 RBM17Q96I25 401 aaKnown RBP19.92■□□□□ 0.78
PHRF1-202ENST00000413872 GNPATO15228 680 aa19.92■□□□□ 0.78
PHRF1-202ENST00000413872 IL13P35225 146 aa19.92■□□□□ 0.78
PHRF1-202ENST00000413872 RAD50Q92878 1312 aa19.92■□□□□ 0.78
PHRF1-202ENST00000413872 ZSCAN12O43309 604 aa19.91■□□□□ 0.78
PHRF1-202ENST00000413872 RNF113AO15541 343 aaKnown RBP19.91■□□□□ 0.78
PHRF1-202ENST00000413872 CEP85Q6P2H3 762 aa19.91■□□□□ 0.78
PHRF1-202ENST00000413872 SLAIN2Q9P270 581 aa19.91■□□□□ 0.78
PHRF1-202ENST00000413872 CWF19L2Q2TBE0 894 aaKnown RBP19.9■□□□□ 0.78
PHRF1-202ENST00000413872 FAM114A1Q8IWE2 563 aa19.9■□□□□ 0.78
PHRF1-202ENST00000413872 CCDC144CPQ8IYA2 1237 aa19.9■□□□□ 0.78
PHRF1-202ENST00000413872 STK32BQ9NY57 414 aa19.9■□□□□ 0.78
PHRF1-202ENST00000413872 CCNL1Q9UK58 526 aaPredicted RBP19.9■□□□□ 0.78
PHRF1-202ENST00000413872 IQSEC3Q9UPP2 1182 aaPredicted RBP19.9■□□□□ 0.78
PHRF1-202ENST00000413872 SH3TC1Q8TE82 1336 aa19.9■□□□□ 0.78
PHRF1-202ENST00000413872 PER1O15534 1290 aaPredicted RBP19.9■□□□□ 0.78
PHRF1-202ENST00000413872 NEBLO76041 1014 aa19.9■□□□□ 0.78
PHRF1-202ENST00000413872 B4DLN1 442 aa19.9■□□□□ 0.78
PHRF1-202ENST00000413872 MRPL12P52815 198 aaKnown RBP19.9■□□□□ 0.78
PHRF1-202ENST00000413872 SKAP1Q86WV1 359 aa19.9■□□□□ 0.78
PHRF1-202ENST00000413872 TSPYL6Q8N831 410 aa19.9■□□□□ 0.78
PHRF1-202ENST00000413872 CCDC191Q8NCU4 936 aa19.9■□□□□ 0.78
PHRF1-202ENST00000413872 CCDC102BQ68D86 513 aa19.89■□□□□ 0.78
PHRF1-202ENST00000413872 RTL9Q8NET4 1388 aa19.89■□□□□ 0.78
PHRF1-202ENST00000413872 CNBD1Q8NA66 436 aa19.89■□□□□ 0.77
PHRF1-202ENST00000413872 TOP1P11387 765 aaKnown RBP19.89■□□□□ 0.77
PHRF1-202ENST00000413872 SSFA2P28290 1259 aa19.89■□□□□ 0.77
PHRF1-202ENST00000413872 PA2G4Q9UQ80 394 aaKnown RBP19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms