RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 HDGFL1Q5TGJ6 251 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 MYSM1Q5VVJ2 828 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 ICE2Q659A1 982 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 KRT77Q7Z794 578 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 RAVER1Q8IY67 606 aaKnown RBP4.97□□□□□ -1.61
MCF2-203ENST00000370576 KLF15Q9UIH9 416 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 VDRP11473 427 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 ERCC5P28715 1186 aaPredicted RBP4.97□□□□□ -1.61
MCF2-203ENST00000370576 ZKSCAN2Q63HK3 967 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 CCSAPQ6IQ19 270 aaPredicted RBP4.97□□□□□ -1.61
MCF2-203ENST00000370576 GET4Q7L5D6 327 aaPredicted RBP4.97□□□□□ -1.61
MCF2-203ENST00000370576 FMNL3Q8IVF7 1028 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 AKT1S1Q96B36 256 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 COL15A1P39059 1388 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 DOCK2Q92608 1830 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 SLIT2O94813 1529 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 MYH3P11055 1940 aa4.97□□□□□ -1.61
MCF2-203ENST00000370576 HMGB1P1B2RPK0 211 aaPredicted RBP4.96□□□□□ -1.61
MCF2-203ENST00000370576 MAN1A1P33908 653 aa4.96□□□□□ -1.61
MCF2-203ENST00000370576 POU5F1Q01860 360 aaKnown RBP4.96□□□□□ -1.61
MCF2-203ENST00000370576 SLFN5Q08AF3 891 aa4.96□□□□□ -1.61
MCF2-203ENST00000370576 DUSP27Q5VZP5 1158 aa4.96□□□□□ -1.61
MCF2-203ENST00000370576 EGFL6Q8IUX8 553 aa4.96□□□□□ -1.61
MCF2-203ENST00000370576 OTUD6BQ8N6M0 293 aa4.96□□□□□ -1.61
MCF2-203ENST00000370576 TGIF2Q9GZN2 237 aa4.96□□□□□ -1.61
MCF2-203ENST00000370576 LTBP1Q14766 1721 aa4.96□□□□□ -1.61
MCF2-203ENST00000370576 SPEF2Q9C093 1822 aa4.96□□□□□ -1.61
MCF2-203ENST00000370576 KIF13BQ9NQT8 1826 aa4.96□□□□□ -1.62
MCF2-203ENST00000370576 PRIM1P49642 420 aaKnown RBP4.96□□□□□ -1.62
MCF2-203ENST00000370576 TMEM132EQ6IEE7 984 aa4.96□□□□□ -1.62
MCF2-203ENST00000370576 NUDT16Q96DE0 195 aaKnown RBP4.96□□□□□ -1.62
MCF2-203ENST00000370576 FEZ2Q9UHY8 353 aaPredicted RBP4.96□□□□□ -1.62
MCF2-203ENST00000370576 FLT4P35916 1363 aa4.96□□□□□ -1.62
MCF2-203ENST00000370576 COL5A2P05997 1499 aaPredicted RBP4.96□□□□□ -1.62
MCF2-203ENST00000370576 OSBPP22059 807 aa4.96□□□□□ -1.62
MCF2-203ENST00000370576 RGL3Q3MIN7 710 aa4.96□□□□□ -1.62
MCF2-203ENST00000370576 POLKQ9UBT6 870 aa4.96□□□□□ -1.62
MCF2-203ENST00000370576 GNALP38405 381 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 PLEKHG4Q58EX7 1191 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 TMEM164Q5U3C3 297 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 ANKLE2Q86XL3 938 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 CARD10Q9BWT7 1032 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 EMILIN3Q9NT22 766 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 NUDCQ9Y266 331 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 HTATSF1O43719 755 aaKnown RBP4.95□□□□□ -1.62
MCF2-203ENST00000370576 FANCCQ00597 558 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 DHX8Q14562 1220 aaKnown RBP4.95□□□□□ -1.62
MCF2-203ENST00000370576 KDM2BQ8NHM5 1336 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 SCAMP3O14828 347 aaKnown RBP4.95□□□□□ -1.62
MCF2-203ENST00000370576 TMEM259Q4ZIN3 620 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 PODNQ7Z5L7 613 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 SLC12A5Q9H2X9 1139 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 PRKAG2Q9UGJ0 569 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 TRIM35Q9UPQ4 493 aa4.95□□□□□ -1.62
MCF2-203ENST00000370576 GNPATO15228 680 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 TAS1R3Q7RTX0 852 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 TPX2Q9ULW0 747 aaKnown RBP4.94□□□□□ -1.62
MCF2-203ENST00000370576 MAFBQ9Y5Q3 323 aaPredicted RBP4.94□□□□□ -1.62
MCF2-203ENST00000370576 DUOX1Q9NRD9 1551 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 NDUFV2P19404 249 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 MSL3Q8N5Y2 521 aaKnown RBP4.94□□□□□ -1.62
MCF2-203ENST00000370576 NKAIN3Q8N8D7 197 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 LGR6Q9HBX8 967 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 PGAP2Q9UHJ9 254 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 BRWD3Q6RI45 1802 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 SYNRGQ9UMZ2 1314 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 CLGNO14967 610 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 MTA1Q13330 715 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 RETREG1Q9H6L5 497 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 PRDM4Q9UKN5 801 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 ATP10DQ9P241 1426 aa4.94□□□□□ -1.62
MCF2-203ENST00000370576 ACEP12821 1306 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 FCHSD2O94868 740 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 POU5F1BQ06416 359 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 CEP120Q8N960 986 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 ATL2Q8NHH9 583 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 C1orf216Q8TAB5 229 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 FRS2Q8WU20 508 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 IER2Q9BTL4 223 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 C12orf49Q9H741 205 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 TRAK1Q9UPV9 953 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 SLC45A1Q9Y2W3 748 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 EID1Q9Y6B2 187 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 LAMA4Q16363 1823 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 XRCC5P13010 732 aaKnown RBP4.93□□□□□ -1.62
MCF2-203ENST00000370576 CALRP27797 417 aaKnown RBP4.93□□□□□ -1.62
MCF2-203ENST00000370576 PDXDC1Q6P996 788 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 ZCRB1Q8TBF4 217 aaKnown RBP4.93□□□□□ -1.62
MCF2-203ENST00000370576 SYNPO2Q9UMS6 1093 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 AKAP2Q9Y2D5 859 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 UBR3Q6ZT12 1888 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 TBC1D10BQ4KMP7 808 aaPredicted RBP4.93□□□□□ -1.62
MCF2-203ENST00000370576 NYAP1Q6ZVC0 841 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 C1orf131Q8NDD1 294 aaKnown RBP4.93□□□□□ -1.62
MCF2-203ENST00000370576 MRPL42Q9Y6G3 142 aaKnown RBP4.93□□□□□ -1.62
MCF2-203ENST00000370576 NUP98P52948 1817 aa4.93□□□□□ -1.62
MCF2-203ENST00000370576 PRC1O43663 620 aa4.92□□□□□ -1.62
MCF2-203ENST00000370576 WAPLQ7Z5K2 1190 aa4.92□□□□□ -1.62
MCF2-203ENST00000370576 STK32AQ8WU08 396 aa4.92□□□□□ -1.62
MCF2-203ENST00000370576 RUNDC1Q96C34 613 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms