RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 C14orf93Q9H972 538 aaKnown RBP17.93■□□□□ 0.46
PTPRF-201ENST00000359947 NOP2P46087 812 aaKnown RBP17.92■□□□□ 0.46
PTPRF-201ENST00000359947 SCAND2PQ9GZW5 306 aaPredicted RBP17.92■□□□□ 0.46
PTPRF-201ENST00000359947 PPIP5K1Q6PFW1 1433 aa17.92■□□□□ 0.46
PTPRF-201ENST00000359947 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.92■□□□□ 0.466e-7■■■■■ 65.8
PTPRF-201ENST00000359947 WDR7Q9Y4E6 1490 aa17.92■□□□□ 0.46
PTPRF-201ENST00000359947 TCEANC2Q96MN5 208 aa17.92■□□□□ 0.46
PTPRF-201ENST00000359947 SMARCC2Q8TAQ2 1214 aa17.92■□□□□ 0.46
PTPRF-201ENST00000359947 EIF3JO75822 258 aaKnown RBP17.91■□□□□ 0.46
PTPRF-201ENST00000359947 CASQ1P31415 396 aa17.91■□□□□ 0.46
PTPRF-201ENST00000359947 SLC9C2Q5TAH2 1124 aa17.91■□□□□ 0.46
PTPRF-201ENST00000359947 PHACTR2O75167 634 aa17.91■□□□□ 0.46
PTPRF-201ENST00000359947 STXBP4Q6ZWJ1 553 aa17.91■□□□□ 0.46
PTPRF-201ENST00000359947 TTC21AQ8NDW8 1320 aa17.91■□□□□ 0.46
PTPRF-201ENST00000359947 UBE4AQ14139 1066 aa17.91■□□□□ 0.46
PTPRF-201ENST00000359947 KLF18A0A0U1RQI7 1052 aa17.91■□□□□ 0.46
PTPRF-201ENST00000359947 RGS22Q8NE09 1264 aa17.91■□□□□ 0.46
PTPRF-201ENST00000359947 TCHPQ9BT92 498 aa17.91■□□□□ 0.46
PTPRF-201ENST00000359947 HMGXB3Q12766 1538 aa17.91■□□□□ 0.46
PTPRF-201ENST00000359947 AFMP43652 599 aa17.9■□□□□ 0.46
PTPRF-201ENST00000359947 KIF4BQ2VIQ3 1234 aa17.9■□□□□ 0.46
PTPRF-201ENST00000359947 MAGEB6P1A0A0J9YX57 407 aa17.9■□□□□ 0.46
PTPRF-201ENST00000359947 KIF5CO60282 957 aa17.9■□□□□ 0.46
PTPRF-201ENST00000359947 MCM4P33991 863 aa17.9■□□□□ 0.46
PTPRF-201ENST00000359947 MCM5P33992 734 aa17.9■□□□□ 0.46
PTPRF-201ENST00000359947 PA2G4Q9UQ80 394 aaKnown RBP17.9■□□□□ 0.46
PTPRF-201ENST00000359947 CCDC91Q7Z6B0 441 aa17.9■□□□□ 0.46
PTPRF-201ENST00000359947 TRAPPC3LQ5T215 181 aa17.9■□□□□ 0.46
PTPRF-201ENST00000359947 LMAN1P49257 510 aa17.89■□□□□ 0.46
PTPRF-201ENST00000359947 NECAB1Q8N987 351 aa17.89■□□□□ 0.46
PTPRF-201ENST00000359947 IFFO1Q0D2I5 559 aa17.89■□□□□ 0.45
PTPRF-201ENST00000359947 GOLGA6L7A0A1B0GV03 622 aa17.89■□□□□ 0.45
PTPRF-201ENST00000359947 PRKG1Q13976 671 aa17.89■□□□□ 0.45
PTPRF-201ENST00000359947 TRMT1Q9NXH9 659 aaKnown RBP17.89■□□□□ 0.45
PTPRF-201ENST00000359947 MCM9Q9NXL9 1143 aa17.89■□□□□ 0.45
PTPRF-201ENST00000359947 NAPAP54920 295 aa17.89■□□□□ 0.45
PTPRF-201ENST00000359947 HSP90AA4PQ58FG1 418 aa17.89■□□□□ 0.45
PTPRF-201ENST00000359947 EXOC1Q9NV70 894 aa17.89■□□□□ 0.45
PTPRF-201ENST00000359947 MAGEB6Q8N7X4 407 aa17.89■□□□□ 0.45
PTPRF-201ENST00000359947 IRS4O14654 1257 aaPredicted RBP17.88■□□□□ 0.45
PTPRF-201ENST00000359947 CCDC183Q5T5S1 534 aa17.88■□□□□ 0.45
PTPRF-201ENST00000359947 CHST3Q7LGC8 479 aa17.88■□□□□ 0.45
PTPRF-201ENST00000359947 ESR2Q92731 530 aa17.88■□□□□ 0.45
PTPRF-201ENST00000359947 MEIS3Q99687 375 aa17.88■□□□□ 0.45
PTPRF-201ENST00000359947 GRM8O00222 908 aa17.88■□□□□ 0.45
PTPRF-201ENST00000359947 STX6O43752 255 aa17.88■□□□□ 0.45
PTPRF-201ENST00000359947 SAP30BPQ9UHR5 308 aaKnown RBP17.88■□□□□ 0.45
PTPRF-201ENST00000359947 LAMC3Q9Y6N6 1575 aa17.88■□□□□ 0.45
PTPRF-201ENST00000359947 GOLGA6L10A0A0M3HER8 536 aa17.88■□□□□ 0.45
PTPRF-201ENST00000359947 MAP2K1Q02750 393 aaPredicted RBP17.88■□□□□ 0.45
PTPRF-201ENST00000359947 NCOA1Q15788 1441 aa17.88■□□□□ 0.45
PTPRF-201ENST00000359947 CLIP2Q9UDT6 1046 aa17.88■□□□□ 0.45
PTPRF-201ENST00000359947 YEATS4O95619 227 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 RAB3GAP1Q15042 981 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 KRT23Q9C075 422 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 ZBTB43O43298 467 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 TBC1D9Q6ZT07 1266 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 RHPN1Q8TCX5 695 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 PKD2L1Q9P0L9 805 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 DISP3Q9P2K9 1392 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 PDIA4P13667 645 aaKnown RBP17.87■□□□□ 0.45
PTPRF-201ENST00000359947 SSFA2P28290 1259 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 AKAP4Q5JQC9 854 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 CCDC24Q8N4L8 307 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 USO1O60763 962 aaKnown RBP17.87■□□□□ 0.45
PTPRF-201ENST00000359947 URI1O94763 535 aaPredicted RBP17.87■□□□□ 0.45
PTPRF-201ENST00000359947 SCAF11Q99590 1463 aaKnown RBP17.87■□□□□ 0.45
PTPRF-201ENST00000359947 ERMNQ8TAM6 284 aa17.87■□□□□ 0.45
PTPRF-201ENST00000359947 RTN1Q16799 776 aa17.86■□□□□ 0.45
PTPRF-201ENST00000359947 BRF1Q92994 677 aa17.86■□□□□ 0.45
PTPRF-201ENST00000359947 CRACR2AQ9BSW2 395 aa17.86■□□□□ 0.45
PTPRF-201ENST00000359947 DHX29Q7Z478 1369 aaKnown RBP17.86■□□□□ 0.45
PTPRF-201ENST00000359947 ZNF608Q9ULD9 1512 aaPredicted RBP17.86■□□□□ 0.45
PTPRF-201ENST00000359947 CUL7Q14999 1698 aa17.86■□□□□ 0.45
PTPRF-201ENST00000359947 UBXN4Q92575 508 aa17.86■□□□□ 0.45
PTPRF-201ENST00000359947 STK32BQ9NY57 414 aa17.86■□□□□ 0.45
PTPRF-201ENST00000359947 UQCRHLA0A096LP55 91 aa17.86■□□□□ 0.45
PTPRF-201ENST00000359947 PABPN1LA6NDY0 278 aaKnown RBP17.86■□□□□ 0.45
PTPRF-201ENST00000359947 UQCRHP07919 91 aa17.86■□□□□ 0.45
PTPRF-201ENST00000359947 STAT6P42226 847 aa17.86■□□□□ 0.45
PTPRF-201ENST00000359947 MRPS9P82933 396 aaKnown RBP17.86■□□□□ 0.45
PTPRF-201ENST00000359947 KDM5BQ9UGL1 1544 aa17.85■□□□□ 0.45
PTPRF-201ENST00000359947 FAM98CQ17RN3 349 aaKnown RBP17.85■□□□□ 0.45
PTPRF-201ENST00000359947 CWF19L2Q2TBE0 894 aaKnown RBP17.85■□□□□ 0.45
PTPRF-201ENST00000359947 TRIM47Q96LD4 638 aa17.85■□□□□ 0.45
PTPRF-201ENST00000359947 UHRF1BP1LA0JNW5 1464 aa17.85■□□□□ 0.45
PTPRF-201ENST00000359947 SPDYE3A6NKU9 549 aa17.85■□□□□ 0.45
PTPRF-201ENST00000359947 TERF1P54274 439 aa17.85■□□□□ 0.45
PTPRF-201ENST00000359947 CCNL1Q9UK58 526 aaPredicted RBP17.85■□□□□ 0.45
PTPRF-201ENST00000359947 ALG1Q9BT22 464 aa17.85■□□□□ 0.45
PTPRF-201ENST00000359947 CIZ1Q9ULV3 898 aaPredicted RBP17.85■□□□□ 0.45
PTPRF-201ENST00000359947 PTPN14Q15678 1187 aa17.85■□□□□ 0.45
PTPRF-201ENST00000359947 TMC6Q7Z403 805 aa17.85■□□□□ 0.45
PTPRF-201ENST00000359947 C19orf44Q9H6X5 657 aa17.85■□□□□ 0.45
PTPRF-201ENST00000359947 NBPF7P0C2Y1 421 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-201ENST00000359947 ZSCAN12O43309 604 aa17.84■□□□□ 0.45
PTPRF-201ENST00000359947 LDHBP07195 334 aaKnown RBP17.84■□□□□ 0.45
PTPRF-201ENST00000359947 HLTFQ14527 1009 aaKnown RBP eCLIP17.84■□□□□ 0.45
PTPRF-201ENST00000359947 EIF4A2Q14240 407 aaKnown RBP17.84■□□□□ 0.45
PTPRF-201ENST00000359947 RBM17Q96I25 401 aaKnown RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms