RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 CLSTN1O94985 981 aa14.46□□□□□ -0.1
SNRNP48-201ENST00000342415 KCNA6P17658 529 aa14.46□□□□□ -0.1
SNRNP48-201ENST00000342415 GTF2F1P35269 517 aaKnown RBP eCLIP14.46□□□□□ -0.1
SNRNP48-201ENST00000342415 MCMDC2Q4G0Z9 681 aa14.46□□□□□ -0.1
SNRNP48-201ENST00000342415 CABLES1Q8TDN4 633 aa14.46□□□□□ -0.1
SNRNP48-201ENST00000342415 EAF2Q96CJ1 260 aaPredicted RBP14.46□□□□□ -0.1
SNRNP48-201ENST00000342415 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.46□□□□□ -0.11e-7■■■■■ 27.7
SNRNP48-201ENST00000342415 A0A0D9SFI3 127 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 SMTNL1A8MU46 457 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 NBPF6Q5VWK0 638 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 TRIM22Q8IYM9 498 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 SSH3Q8TE77 659 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 LEO1Q8WVC0 666 aaPredicted RBP14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 NBPF4Q96M43 638 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 MINDY4BA8MYZ0 360 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 NR1I2O75469 434 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 CNNM3Q8NE01 707 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 HMG20BQ9P0W2 317 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 CTAGE5O15320 804 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 PDIA4P13667 645 aaKnown RBP14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 AIDAQ96BJ3 306 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 IFNKQ9P0W0 207 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 UHRF1BP1LA0JNW5 1464 aa14.45□□□□□ -0.1
SNRNP48-201ENST00000342415 ZSCAN16Q9H4T2 348 aaPredicted RBP14.44□□□□□ -0.1
SNRNP48-201ENST00000342415 PODXL2Q9NZ53 605 aa14.44□□□□□ -0.1
SNRNP48-201ENST00000342415 CLTCL1P53675 1640 aa14.44□□□□□ -0.1
SNRNP48-201ENST00000342415 KIF6Q6ZMV9 814 aa14.44□□□□□ -0.1
SNRNP48-201ENST00000342415 PREX2Q70Z35 1606 aa14.44□□□□□ -0.1
SNRNP48-201ENST00000342415 MYO5CQ9NQX4 1742 aa14.44□□□□□ -0.1
SNRNP48-201ENST00000342415 ALDH1L1O75891 902 aa14.44□□□□□ -0.1
SNRNP48-201ENST00000342415 HMGB1P09429 215 aaKnown RBP14.44□□□□□ -0.1
SNRNP48-201ENST00000342415 RPS6KB1P23443 525 aa14.44□□□□□ -0.1
SNRNP48-201ENST00000342415 SYT10Q6XYQ8 523 aa14.44□□□□□ -0.1
SNRNP48-201ENST00000342415 PRAMEF22A3QJZ6 481 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 CAGE1Q8TC20 777 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 RNF216Q9NWF9 866 aaPredicted RBP14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 TTC21AQ8NDW8 1320 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 METP08581 1390 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 CUL4AQ13619 759 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 PROSER3Q2NL68 480 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 FILIP1LQ4L180 1135 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 MRPS27Q92552 414 aaKnown RBP14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 TLR7Q9NYK1 1049 aaKnown RBP14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 GNG11P61952 73 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 FAM193AP78312 1265 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 AKAP4Q5JQC9 854 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 PAXBP1Q9Y5B6 917 aa14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 IBTKQ9P2D0 1353 aaPredicted RBP14.43□□□□□ -0.1
SNRNP48-201ENST00000342415 MPHOSPH8Q99549 860 aa14.42□□□□□ -0.1
SNRNP48-201ENST00000342415 UBASH3AP57075 661 aa14.42□□□□□ -0.1
SNRNP48-201ENST00000342415 XBP1P17861 261 aa14.42□□□□□ -0.1
SNRNP48-201ENST00000342415 ZNF594Q96JF6 807 aaPredicted RBP14.42□□□□□ -0.1
SNRNP48-201ENST00000342415 FTOQ9C0B1 505 aaKnown RBP eCLIP14.42□□□□□ -0.1
SNRNP48-201ENST00000342415 LSG1Q9H089 658 aaKnown RBP14.42□□□□□ -0.1
SNRNP48-201ENST00000342415 OSBPL3Q9H4L5 887 aa14.42□□□□□ -0.1
SNRNP48-201ENST00000342415 PRR36Q9H6K5 1346 aa14.42□□□□□ -0.1
SNRNP48-201ENST00000342415 YEATS2Q9ULM3 1422 aa14.42□□□□□ -0.1
SNRNP48-201ENST00000342415 CBFA2T2O43439 604 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 EIF4A1P60842 406 aaKnown RBP14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 LDHAL6AQ6ZMR3 332 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 LRP2BPQ9P2M1 347 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 KIAA0232Q92628 1395 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 TNRQ92752 1358 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 IFIT3O14879 490 aaKnown RBP14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 SYKP43405 635 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 SLC4A8Q2Y0W8 1093 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 GTF3C6Q969F1 213 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 CCDC102AQ96A19 550 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 IQSEC3Q9UPP2 1182 aaPredicted RBP14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 ZNF75DP51815 510 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 IFIT5Q13325 482 aaKnown RBP14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 ARHGAP29Q52LW3 1261 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 MYOM2P54296 1465 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 CCP110O43303 1012 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 LTKP29376 864 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 UBAC1Q9BSL1 405 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 SLC26A6Q9BXS9 759 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 NAPBQ9H115 298 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 PAG1Q9NWQ8 432 aa14.41□□□□□ -0.1
SNRNP48-201ENST00000342415 DHX8Q14562 1220 aaKnown RBP14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 DHX32Q7L7V1 743 aaKnown RBP14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 KRT28Q7Z3Y7 464 aa14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 GOLGA8AA7E2F4 631 aa14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 RNMTO43148 476 aaKnown RBP14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 CDKL5O76039 1030 aa14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 GCP02774 474 aa14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 SNRPA1P09661 255 aaKnown RBP14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 GSDMDP57764 484 aa14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 KIF4BQ2VIQ3 1234 aa14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 IQGAP3Q86VI3 1631 aa14.4□□□□□ -0.1
SNRNP48-201ENST00000342415 FAM135BQ49AJ0 1406 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 SPTLC2O15270 562 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 IARSP41252 1262 aaKnown RBP14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 PTPN21Q16825 1174 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 SPECC1Q5M775 1068 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 AXDND1Q5T1B0 1012 aaPredicted RBP14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 POLR1AO95602 1720 aaPredicted RBP14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 METAP2P50579 478 aaKnown RBP eCLIP14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 KRT222Q8N1A0 295 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 HELBQ8NG08 1087 aaPredicted RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms