RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 CCZ1BP86790 482 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 CCZ1P86791 482 aaPredicted RBP5.57□□□□□ -1.52
PTPN13-201ENST00000316707 JMYQ8N9B5 988 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 GTF3C6Q969F1 213 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 GBP3Q9H0R5 595 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 ACBD3Q9H3P7 528 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 IKBKBO14920 756 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 DHX16O60231 1041 aaKnown RBP5.57□□□□□ -1.52
PTPN13-201ENST00000316707 LARGE1O95461 756 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 PNMA6AP0CW24 399 aaPredicted RBP5.57□□□□□ -1.52
PTPN13-201ENST00000316707 HSP90AB2PQ58FF8 381 aa5.57□□□□□ -1.52
PTPN13-201ENST00000316707 BCL11BQ9C0K0 894 aaPredicted RBP5.57□□□□□ -1.52
PTPN13-201ENST00000316707 PSME1Q06323 249 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 LARP1Q6PKG0 1096 aaKnown RBP5.56□□□□□ -1.52
PTPN13-201ENST00000316707 CCDC34Q96HJ3 373 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 PSD3Q9NYI0 1048 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 C9orf78Q9NZ63 289 aaPredicted RBP5.56□□□□□ -1.52
PTPN13-201ENST00000316707 USP16Q9Y5T5 823 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 EIF3JO75822 258 aaKnown RBP5.56□□□□□ -1.52
PTPN13-201ENST00000316707 ADCK5Q3MIX3 580 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 NECAB1Q8N987 351 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 KCNG4Q8TDN1 519 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 IL25Q9H293 177 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 ARFGAP3Q9NP61 516 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 SLC27A2O14975 620 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 ARHGAP6O43182 974 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 YEATS4O95619 227 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 RESTQ13127 1097 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 SF3A1Q15459 793 aaKnown RBP5.56□□□□□ -1.52
PTPN13-201ENST00000316707 CCDC158Q5M9N0 1113 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 CCAR1Q8IX12 1150 aaKnown RBP5.56□□□□□ -1.52
PTPN13-201ENST00000316707 MSL3Q8N5Y2 521 aaKnown RBP5.56□□□□□ -1.52
PTPN13-201ENST00000316707 GPR161Q8N6U8 529 aaKnown RBP5.56□□□□□ -1.52
PTPN13-201ENST00000316707 NEK1Q96PY6 1258 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 ERCC6L2Q5T890 1561 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 TECPR2O15040 1411 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 USPL1Q5W0Q7 1092 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 MAP3K19Q56UN5 1328 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 DDX58O95786 925 aaKnown RBP5.56□□□□□ -1.52
PTPN13-201ENST00000316707 CLCN6P51797 869 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 ERCC6LQ2NKX8 1250 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 BEND3Q5T5X7 828 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 DBF4Q9UBU7 674 aaPredicted RBP5.56□□□□□ -1.52
PTPN13-201ENST00000316707 SMC2O95347 1197 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 ME1P48163 572 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 PTH1RQ03431 593 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 BRD3Q15059 726 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 AACSQ86V21 672 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 LINS1Q8NG48 757 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 RABGGTAQ92696 567 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 IFT172Q9UG01 1749 aa5.56□□□□□ -1.52
PTPN13-201ENST00000316707 CCDC151A5D8V7 595 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 ADALQ6DHV7 355 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 PFKFB2O60825 505 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 HSP90B1P14625 803 aaKnown RBP5.55□□□□□ -1.52
PTPN13-201ENST00000316707 CPA1P15085 419 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 STK38Q15208 465 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 ERCC4Q92889 916 aaPredicted RBP5.55□□□□□ -1.52
PTPN13-201ENST00000316707 FAM173BQ6P4H8 233 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 FSIP1Q8NA03 581 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 SMARCC2Q8TAQ2 1214 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 FAM107BQ9H098 131 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 TRMT1Q9NXH9 659 aaKnown RBP5.55□□□□□ -1.52
PTPN13-201ENST00000316707 ZRANB1Q9UGI0 708 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 NR1I2O75469 434 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 NAA30Q147X3 362 aaPredicted RBP5.55□□□□□ -1.52
PTPN13-201ENST00000316707 HSP90B2PQ58FF3 399 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 PGBD1Q96JS3 809 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.55□□□□□ -1.52
PTPN13-201ENST00000316707 FHOD1Q9Y613 1164 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 PIK3C2BO00750 1634 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 ERICH4A6NGS2 130 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 HNRNPH2P55795 449 aaKnown RBP5.55□□□□□ -1.52
PTPN13-201ENST00000316707 CCDC93Q567U6 631 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 LEKR1Q6ZMV7 388 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 ENGASEQ8NFI3 743 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 GOLGA5Q8TBA6 731 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 ZRANB2O95218 330 aaKnown RBP eCLIP5.55□□□□□ -1.52
PTPN13-201ENST00000316707 SLC3A2P08195 630 aaKnown RBP5.55□□□□□ -1.52
PTPN13-201ENST00000316707 NMIQ13287 307 aaPredicted RBP5.55□□□□□ -1.52
PTPN13-201ENST00000316707 SYT10Q6XYQ8 523 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 ANKRD24Q8TF21 1146 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 MIS18AQ9NYP9 233 aa5.55□□□□□ -1.52
PTPN13-201ENST00000316707 ORC3Q9UBD5 711 aaPredicted RBP5.55□□□□□ -1.52
PTPN13-201ENST00000316707 ST3GAL1Q11201 340 aa5.54□□□□□ -1.52
PTPN13-201ENST00000316707 BRAPQ7Z569 592 aa5.54□□□□□ -1.52
PTPN13-201ENST00000316707 KIAA1468Q9P260 1216 aa5.54□□□□□ -1.52
PTPN13-201ENST00000316707 PTPRUQ92729 1446 aa5.54□□□□□ -1.52
PTPN13-201ENST00000316707 E4F1Q66K89 784 aaPredicted RBP5.54□□□□□ -1.52
PTPN13-201ENST00000316707 SYNE3Q6ZMZ3 975 aa5.54□□□□□ -1.52
PTPN13-201ENST00000316707 AOPEPQ8N6M6 819 aa5.54□□□□□ -1.52
PTPN13-201ENST00000316707 EYA1Q99502 592 aa5.54□□□□□ -1.52
PTPN13-201ENST00000316707 RTEL1Q9NZ71 1219 aa5.54□□□□□ -1.52
PTPN13-201ENST00000316707 MKRN1Q9UHC7 482 aaKnown RBP5.54□□□□□ -1.52
PTPN13-201ENST00000316707 HOOK1Q9UJC3 728 aaKnown RBP5.54□□□□□ -1.52
PTPN13-201ENST00000316707 ZC3H13Q5T200 1668 aaKnown RBP5.54□□□□□ -1.52
PTPN13-201ENST00000316707 TADA3O75528 432 aa5.54□□□□□ -1.52
PTPN13-201ENST00000316707 NBPF7P0C2Y1 421 aaPredicted RBP5.54□□□□□ -1.52
PTPN13-201ENST00000316707 CASQ1P31415 396 aa5.54□□□□□ -1.52
PTPN13-201ENST00000316707 C11orf57Q6ZUT1 292 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms