RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 Q6ZUG5 572 aa14.65□□□□□ -0.06
CHMP3-201ENST00000263856 TM6SF1Q9BZW5 370 aa14.65□□□□□ -0.06
CHMP3-201ENST00000263856 SCAND2PQ9GZW5 306 aaPredicted RBP14.65□□□□□ -0.06
CHMP3-201ENST00000263856 PXDNLA1KZ92 1463 aa14.65□□□□□ -0.06
CHMP3-201ENST00000263856 RNMTO43148 476 aaKnown RBP14.64□□□□□ -0.07
CHMP3-201ENST00000263856 GIGYF1O75420 1035 aaPredicted RBP14.64□□□□□ -0.07
CHMP3-201ENST00000263856 TNNT1P13805 278 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 NEXNQ0ZGT2 675 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 TOB2Q14106 344 aaPredicted RBP14.64□□□□□ -0.07
CHMP3-201ENST00000263856 AKAP4Q5JQC9 854 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 CHST3Q7LGC8 479 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 IP6K1Q92551 441 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.64□□□□□ -0.07
CHMP3-201ENST00000263856 V9GYY5 206 aaPredicted RBP14.64□□□□□ -0.07
CHMP3-201ENST00000263856 PIK3C2AO00443 1686 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 ATP5J2-PTCD1G3V325 749 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 HIP1O00291 1037 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 NPHP1O15259 732 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 PTCD1O75127 700 aaKnown RBP14.64□□□□□ -0.07
CHMP3-201ENST00000263856 IL17RAQ96F46 866 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 NEUROD6Q96NK8 337 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 SPTLC3Q9NUV7 552 aa14.64□□□□□ -0.07
CHMP3-201ENST00000263856 BECN2A8MW95 431 aa14.63□□□□□ -0.07
CHMP3-201ENST00000263856 ANKRD1Q15327 319 aa14.63□□□□□ -0.07
CHMP3-201ENST00000263856 ARID5BQ14865 1188 aa14.63□□□□□ -0.07
CHMP3-201ENST00000263856 BABAM1Q9NWV8 329 aa14.63□□□□□ -0.07
CHMP3-201ENST00000263856 TRMT1Q9NXH9 659 aaKnown RBP14.63□□□□□ -0.07
CHMP3-201ENST00000263856 CACNA1FO60840 1977 aa14.63□□□□□ -0.07
CHMP3-201ENST00000263856 DIP2AQ14689 1571 aa14.63□□□□□ -0.07
CHMP3-201ENST00000263856 KAZALD1Q96I82 304 aa14.63□□□□□ -0.07
CHMP3-201ENST00000263856 NEK1Q96PY6 1258 aa14.63□□□□□ -0.07
CHMP3-201ENST00000263856 ALDH1L1O75891 902 aa14.62□□□□□ -0.07
CHMP3-201ENST00000263856 TPM3P06753 285 aa14.62□□□□□ -0.07
CHMP3-201ENST00000263856 EPHA10Q5JZY3 1008 aa14.62□□□□□ -0.07
CHMP3-201ENST00000263856 LINS1Q8NG48 757 aa14.62□□□□□ -0.07
CHMP3-201ENST00000263856 PGBD1Q96JS3 809 aa14.62□□□□□ -0.07
CHMP3-201ENST00000263856 TOPAZ1Q8N9V7 1692 aa14.62□□□□□ -0.07
CHMP3-201ENST00000263856 NPHP3Q7Z494 1330 aa14.62□□□□□ -0.07
CHMP3-201ENST00000263856 SMAP1Q8IYB5 467 aaPredicted RBP14.62□□□□□ -0.07
CHMP3-201ENST00000263856 XAGE3Q8WTP9 111 aa14.62□□□□□ -0.07
CHMP3-201ENST00000263856 UBR1Q8IWV7 1749 aa14.62□□□□□ -0.07
CHMP3-201ENST00000263856 ZC3H6P61129 1189 aaKnown RBP14.61□□□□□ -0.07
CHMP3-201ENST00000263856 TFCP2Q12800 502 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 COPS6Q7L5N1 327 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 UBE3BQ7Z3V4 1068 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 RAB11FIP4Q86YS3 637 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 DDX19AQ9NUU7 478 aaKnown RBP14.61□□□□□ -0.07
CHMP3-201ENST00000263856 PRDM4Q9UKN5 801 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 TBX22Q9Y458 520 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 ZNF75DP51815 510 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 CHMP4AQ9BY43 222 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 NCOA5Q9HCD5 579 aaKnown RBP14.61□□□□□ -0.07
CHMP3-201ENST00000263856 HDAC5Q9UQL6 1122 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 FMNL2Q96PY5 1086 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 CLSTN2Q9H4D0 955 aa14.61□□□□□ -0.07
CHMP3-201ENST00000263856 USP42Q9H9J4 1324 aaKnown RBP14.6□□□□□ -0.07
CHMP3-201ENST00000263856 CCDC144BQ3MJ40 725 aa14.6□□□□□ -0.07
CHMP3-201ENST00000263856 ZSCAN25Q6NSZ9 544 aa14.6□□□□□ -0.07
CHMP3-201ENST00000263856 CCDC144CPQ8IYA2 1237 aa14.6□□□□□ -0.07
CHMP3-201ENST00000263856 ANKRD24Q8TF21 1146 aa14.6□□□□□ -0.07
CHMP3-201ENST00000263856 CEMIPQ8WUJ3 1361 aa14.6□□□□□ -0.07
CHMP3-201ENST00000263856 APOBRQ0VD83 1088 aa14.6□□□□□ -0.07
CHMP3-201ENST00000263856 CACTINQ8WUQ7 758 aaKnown RBP14.6□□□□□ -0.07
CHMP3-201ENST00000263856 SYTL4Q96C24 671 aaPredicted RBP14.6□□□□□ -0.07
CHMP3-201ENST00000263856 DBNDD2Q9BQY9 259 aa14.6□□□□□ -0.07
CHMP3-201ENST00000263856 TAF5LO75529 589 aa14.59□□□□□ -0.07
CHMP3-201ENST00000263856 IGKV5-2P06315 115 aa14.59□□□□□ -0.07
CHMP3-201ENST00000263856 ME1P48163 572 aa14.59□□□□□ -0.07
CHMP3-201ENST00000263856 MTX1Q13505 466 aa14.59□□□□□ -0.07
CHMP3-201ENST00000263856 C11orf57Q6ZUT1 292 aaPredicted RBP14.59□□□□□ -0.07
CHMP3-201ENST00000263856 CCAR1Q8IX12 1150 aaKnown RBP14.59□□□□□ -0.07
CHMP3-201ENST00000263856 HOXB7P09629 217 aa14.59□□□□□ -0.07
CHMP3-201ENST00000263856 THEMISQ8N1K5 641 aaPredicted RBP14.59□□□□□ -0.07
CHMP3-201ENST00000263856 CCDC112Q8NEF3 446 aa14.59□□□□□ -0.07
CHMP3-201ENST00000263856 DBNLQ9UJU6 430 aaKnown RBP14.59□□□□□ -0.07
CHMP3-201ENST00000263856 USP16Q9Y5T5 823 aa14.59□□□□□ -0.07
CHMP3-201ENST00000263856 NLRP2Q9NX02 1062 aa14.59□□□□□ -0.07
CHMP3-201ENST00000263856 CCDC73Q6ZRK6 1079 aa14.58□□□□□ -0.08
CHMP3-201ENST00000263856 GTF3C6Q969F1 213 aa14.58□□□□□ -0.08
CHMP3-201ENST00000263856 ZNF330Q9Y3S2 320 aaPredicted RBP14.58□□□□□ -0.08
CHMP3-201ENST00000263856 NWD1Q149M9 1564 aa14.58□□□□□ -0.08
CHMP3-201ENST00000263856 GOLIM4O00461 696 aa14.58□□□□□ -0.08
CHMP3-201ENST00000263856 CYP21A2P08686 494 aa14.58□□□□□ -0.08
CHMP3-201ENST00000263856 ZRSR1Q15695 479 aaKnown RBP14.58□□□□□ -0.08
CHMP3-201ENST00000263856 A0A0G2JLW4 131 aa14.57□□□□□ -0.08
CHMP3-201ENST00000263856 SCRN1Q12765 414 aa14.57□□□□□ -0.08
CHMP3-201ENST00000263856 LRRC37A3O60309 1634 aa14.57□□□□□ -0.08
CHMP3-201ENST00000263856 KINO60870 393 aaKnown RBP14.57□□□□□ -0.08
CHMP3-201ENST00000263856 GTF2F1P35269 517 aaKnown RBP eCLIP14.57□□□□□ -0.08
CHMP3-201ENST00000263856 OTUD7BQ6GQQ9 843 aa14.57□□□□□ -0.08
CHMP3-201ENST00000263856 NFATC2IPQ8NCF5 419 aa14.57□□□□□ -0.08
CHMP3-201ENST00000263856 ORAI2Q96SN7 254 aa14.57□□□□□ -0.08
CHMP3-201ENST00000263856 DDX21Q9NR30 783 aaKnown RBP eCLIP14.57□□□□□ -0.08
CHMP3-201ENST00000263856 PXDNQ92626 1479 aa14.57□□□□□ -0.08
CHMP3-201ENST00000263856 USP27XA6NNY8 438 aa14.57□□□□□ -0.08
CHMP3-201ENST00000263856 ISM2Q6H9L7 571 aa14.57□□□□□ -0.08
CHMP3-201ENST00000263856 ELP1O95163 1332 aa14.56□□□□□ -0.08
CHMP3-201ENST00000263856 NEURL1BA8MQ27 555 aa14.56□□□□□ -0.08
CHMP3-201ENST00000263856 BIN1O00499 593 aa14.56□□□□□ -0.08
CHMP3-201ENST00000263856 GCP02774 474 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms