RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 PNPLA2Q96AD5 504 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 SFXN2Q96NB2 322 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 ZNF184Q99676 751 aaPredicted RBP14.55□□□□□ -0.08
SS18-211ENST00000578954 OR11A1Q9GZK7 315 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 FKRPQ9H9S5 495 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 HDGFL3Q9Y3E1 203 aa14.55□□□□□ -0.08
SS18-211ENST00000578954 EFCAB9A8MZ26 197 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 MT-ATP6P00846 226 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 IGHG3P01860 377 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 TSPAN19P0C672 248 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 OSMP13725 252 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 POU2F1P14859 743 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 ZNF24P17028 368 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 CDH2P19022 906 aaPredicted RBP14.54□□□□□ -0.08
SS18-211ENST00000578954 CCNA2P20248 432 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 TCEA1P23193 301 aaKnown RBP14.54□□□□□ -0.08
SS18-211ENST00000578954 ESRRGP62508 458 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 PMP22Q01453 160 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 FHL1Q13642 323 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 ANKDD1AQ495B1 522 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 NHSL2Q5HYW2 709 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 C1QL3Q5VWW1 255 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 MFSD8Q8NHS3 518 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 TAAR8Q969N4 342 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 ARL5BQ96KC2 179 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 TAAR6Q96RI8 345 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 MBOAT4Q96T53 435 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 ARHGAP9Q9BRR9 750 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 MFRPQ9BY79 579 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 ZNF337Q9Y3M9 751 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 ORC6Q9Y5N6 252 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 AP4B1Q9Y6B7 739 aa14.54□□□□□ -0.08
SS18-211ENST00000578954 MED12Q93074 2177 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 UNC119BA6NIH7 251 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 GJE1A6NN92 205 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 HCN1O60741 890 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 PTP4A3O75365 173 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 SNAP29O95721 258 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 ASAH2BP0C7U1 165 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 IMPDH2P12268 514 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 SHC1P29353 583 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 IDUAP35475 653 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 RPS5P46782 204 aaKnown RBP14.53□□□□□ -0.08
SS18-211ENST00000578954 RPS4XP62701 263 aaKnown RBP14.53□□□□□ -0.08
SS18-211ENST00000578954 SLC10A1Q14973 349 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 MFSD13AQ14CX5 517 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 PLEKHN1Q494U1 663 aaPredicted RBP14.53□□□□□ -0.08
SS18-211ENST00000578954 CMPK2Q5EBM0 449 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 ZNF620Q6ZNG0 422 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 TRILQ7L0X0 811 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 MEX3DQ86XN8 651 aaKnown RBP14.53□□□□□ -0.08
SS18-211ENST00000578954 KIF18BQ86Y91 864 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 SIAH3Q8IW03 269 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 SLC43A2Q8N370 569 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 MIB2Q96AX9 1013 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 MOGAT1Q96PD6 335 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 SLC6A15Q9H2J7 730 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 TOR3AQ9H497 397 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 PLSCR2Q9NRY7 297 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 IL20Q9NYY1 176 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 ZNF229Q9UJW7 825 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 SIGLEC7Q9Y286 467 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 TRAPPC4Q9Y296 219 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 CDH10Q9Y6N8 788 aa14.53□□□□□ -0.08
SS18-211ENST00000578954 PKD1L2Q7Z442 2459 aa14.52□□□□□ -0.08
SS18-211ENST00000578954 A0A1B0GVC2 190 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 LIPT2A6NK58 231 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 LRRN3E7EW58 273 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 H0YAE9 185 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 H3BML4 177 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 TFECO14948 347 aaPredicted RBP14.52□□□□□ -0.09
SS18-211ENST00000578954 SLC16A6O15403 523 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 CH25HO95992 272 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 SAGP10523 405 aaPredicted RBP14.52□□□□□ -0.09
SS18-211ENST00000578954 PEPDP12955 493 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 FUT1P19526 365 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 FXYD6P3P58550 94 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 NPRL3Q12980 569 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 MYBPHQ13203 477 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 BCL2A1Q16548 175 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 ZNF239Q16600 458 aaKnown RBP14.52□□□□□ -0.09
SS18-211ENST00000578954 CTU2Q2VPK5 515 aaKnown RBP14.52□□□□□ -0.09
SS18-211ENST00000578954 RPL13AP3Q6NVV1 102 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 GALNT5Q7Z7M9 940 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 GGNQ86UU5 652 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 Q8NA96 180 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 OR13C2Q8NGS9 318 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 NEIL3Q8TAT5 605 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 ADGRG7Q96K78 797 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 KLHL15Q96M94 604 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 PITX2Q99697 317 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 TACO1Q9BSH4 297 aaKnown RBP14.52□□□□□ -0.09
SS18-211ENST00000578954 ADI1Q9BV57 179 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 GRIP2Q9C0E4 1043 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 TMEM185BQ9H7F4 350 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 NANSQ9NR45 359 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 HIF3AQ9Y2N7 669 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 CORINQ9Y5Q5 1042 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 LIPGQ9Y5X9 500 aa14.52□□□□□ -0.09
SS18-211ENST00000578954 DNPH1O43598 174 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms