RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RAF1P04049 648 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 PRKACBP22694 351 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 SLC6A6P31641 620 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 SIRPAP78324 504 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 SNTA1Q13424 505 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 GPR18Q14330 331 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 PON3Q15166 354 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 GSG1Q2KHT4 349 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF776Q68DI1 518 aaPredicted RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 DMKNQ6E0U4 476 aaPredicted RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 Q6ZTK2 550 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 SLC35F2Q8IXU6 374 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 CDRT4Q8N9R6 151 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 C1orf216Q8TAB5 229 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 KCTD12Q96CX2 325 aaKnown RBP11.17□□□□□ -0.62
CLIP3-201ENST00000360535 FOXN4Q96NZ1 517 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 DDOQ99489 341 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 MCCC2Q9HCC0 563 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF69Q9UC07 566 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 SPACA6W5XKT8 324 aa11.17□□□□□ -0.62
CLIP3-201ENST00000360535 MEIS3P1A6NDR6 274 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 POM121CA8CG34 1229 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 SMAD9O15198 467 aaKnown RBP11.16□□□□□ -0.62
CLIP3-201ENST00000360535 HCRTR1O43613 425 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 RAD1O60671 282 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 UBL3O95164 117 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 BDH1Q02338 343 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 EXOSC2Q13868 293 aaKnown RBP11.16□□□□□ -0.62
CLIP3-201ENST00000360535 KIAA1324Q6UXG2 1013 aaKnown RBP11.16□□□□□ -0.62
CLIP3-201ENST00000360535 APOOLQ6UXV4 268 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 CDH24Q86UP0 819 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 COMMD7Q86VX2 200 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 TPRA1Q86W33 373 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 WDR89Q96FK6 387 aaPredicted RBP11.16□□□□□ -0.62
CLIP3-201ENST00000360535 CNN2Q99439 309 aaKnown RBP11.16□□□□□ -0.62
CLIP3-201ENST00000360535 GTF2A1LQ9UNN4 478 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 SLC22A7Q9Y694 548 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 H7C1C5 153 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 ALDOBP05062 364 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 BLVRAP53004 296 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 TAS2R43P59537 309 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 LCN6P62502 163 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 FAM109BQ6ICB4 259 aaPredicted RBP11.16□□□□□ -0.62
CLIP3-201ENST00000360535 ABHD13Q7L211 337 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 RNF113BQ8IZP6 322 aaKnown RBP11.16□□□□□ -0.62
CLIP3-201ENST00000360535 MS4A15Q8N5U1 240 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 OR9A4Q8NGU2 314 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 OR2T4Q8NH00 348 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 MED30Q96HR3 178 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 C20orf85Q9H1P6 137 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 SRA1Q9HD15 236 aaKnown RBP11.16□□□□□ -0.62
CLIP3-201ENST00000360535 ACTR10Q9NZ32 417 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 HCN3Q9P1Z3 774 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 URADA6NGE7 173 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 ARL6IP5O75915 188 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 ADH1BP00325 375 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 THBS1P07996 1170 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 PITPNAQ00169 270 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 PLAURQ03405 335 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 KCNAB1Q14722 419 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 USP53Q70EK8 1073 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 OR2M2Q96R28 347 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 LMAN2LQ9H0V9 348 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 KIR3DX1Q9H7L2 352 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 NANSQ9NR45 359 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 ST6GALNAC2Q9UJ37 374 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 OR10H1Q9Y4A9 318 aa11.16□□□□□ -0.62
CLIP3-201ENST00000360535 TVP23AA6NH52 213 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 FMO6PO60774 539 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 MPC2O95563 127 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 GPR75O95800 540 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 MAS1P04201 325 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 CA3P07451 260 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 FBXO45P0C2W1 286 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 ANXA7P20073 488 aaKnown RBP11.15□□□□□ -0.62
CLIP3-201ENST00000360535 ADPRHP54922 357 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 UBE2MP61081 183 aaKnown RBP11.15□□□□□ -0.62
CLIP3-201ENST00000360535 RAB14P61106 215 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 CDK5R1Q15078 307 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 FCRL6Q6DN72 434 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 KIRREL2Q6UWL6 708 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 TMPRSS11FQ6ZWK6 438 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 CAMKVQ8NCB2 501 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 TOR1AIP2Q8NFQ8 470 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 ADAMTS14Q8WXS8 1223 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 NXPE2Q96DL1 559 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 SPACA7Q96KW9 195 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.15□□□□□ -0.62
CLIP3-201ENST00000360535 EMC7Q9NPA0 242 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 HRASLS2Q9NWW9 162 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 MRPL39Q9NYK5 338 aaKnown RBP11.15□□□□□ -0.62
CLIP3-201ENST00000360535 MGAT4CQ9UBM8 478 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 IKZF2Q9UKS7 526 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 BRWD1Q9NSI6 2320 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 ARID1AO14497 2285 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 RGS11O94810 467 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 LYPD3O95274 346 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 PDGFAP04085 211 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 PROS1P07225 676 aa11.15□□□□□ -0.62
CLIP3-201ENST00000360535 OR8G3PP0DMU2 310 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms