RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 DIMT1Q9UNQ2 313 aaKnown RBP12.59□□□□□ -0.39
LDLR-201ENST00000252444 SSTR4P31391 388 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 GFOD2Q3B7J2 385 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 MRPL21Q7Z2W9 205 aaKnown RBP12.59□□□□□ -0.39
LDLR-201ENST00000252444 OR9Q2Q8NGE9 314 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 CNIH3Q8TBE1 160 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 SGCDQ92629 289 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 HHLA2Q9UM44 414 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 VDAC3Q9Y277 283 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 NOSIPQ9Y314 301 aaKnown RBP12.59□□□□□ -0.39
LDLR-201ENST00000252444 ZNF814B7Z6K7 855 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 IL32P24001 234 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 GFERP55789 205 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 PCBP4P57723 403 aaKnown RBP12.59□□□□□ -0.39
LDLR-201ENST00000252444 SLC25A24Q6NUK1 477 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 ARHGAP22Q7Z5H3 698 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 CEACAM19Q7Z692 300 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 UBQLNLQ8IYU4 475 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 OR7G2Q8NG99 324 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 DUSP19Q8WTR2 217 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 LHPPQ9H008 270 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 WDR76Q9H967 626 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 ERVK-18Q9QC07 812 aa12.59□□□□□ -0.39
LDLR-201ENST00000252444 MYO18AQ92614 2054 aaKnown RBP12.59□□□□□ -0.39
LDLR-201ENST00000252444 MYOCOSA0A1B0GUC4 107 aa12.58□□□□□ -0.39
LDLR-201ENST00000252444 CLDN24A6NM45 220 aa12.58□□□□□ -0.39
LDLR-201ENST00000252444 PPM1DO15297 605 aa12.58□□□□□ -0.39
LDLR-201ENST00000252444 SYT7O43581 403 aa12.58□□□□□ -0.39
LDLR-201ENST00000252444 RAB3AP20336 220 aa12.58□□□□□ -0.39
LDLR-201ENST00000252444 RNF144AP50876 292 aaPredicted RBP12.58□□□□□ -0.39
LDLR-201ENST00000252444 BDH1Q02338 343 aa12.58□□□□□ -0.39
LDLR-201ENST00000252444 TIGD4Q8IY51 512 aa12.58□□□□□ -0.39
LDLR-201ENST00000252444 OR10Q1Q8NGQ4 319 aa12.58□□□□□ -0.39
LDLR-201ENST00000252444 FCAMRQ8WWV6 532 aa12.58□□□□□ -0.39
LDLR-201ENST00000252444 SHISA7A6NL88 538 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 RLN2P04090 185 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 GABREP78334 506 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 MC2RQ01718 297 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 GPR50Q13585 617 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 GLB1L2Q8IW92 636 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 CCDC36Q8IYA8 594 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 ZFP57Q9NU63 452 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 EIF1AYO14602 144 aaKnown RBP12.58□□□□□ -0.4
LDLR-201ENST00000252444 GALR2O43603 387 aaPredicted RBP12.58□□□□□ -0.4
LDLR-201ENST00000252444 IFNA21P01568 189 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 ERV3-1Q14264 604 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 RAB39AQ14964 217 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 KDM4DQ6B0I6 523 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 GUSBP11Q6P575 273 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 LINC00299Q6ZSB3 139 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 ZNF627Q7L945 461 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 GLRX2Q9NS18 164 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 ATXN7L1Q9ULK2 861 aaPredicted RBP12.58□□□□□ -0.4
LDLR-201ENST00000252444 MED16Q9Y2X0 877 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 SLC22A23A1A5C7 686 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 TEX46H3BTG2 121 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 CD3GP09693 182 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 UBCP0CG48 685 aaKnown RBP12.58□□□□□ -0.4
LDLR-201ENST00000252444 PYCR1P32322 319 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 GAB1Q13480 694 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 STEAP2Q8NFT2 490 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 ABRACLQ9P1F3 81 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 FIGNL2A6NMB9 653 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 LILRB5O75023 590 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 SFTPDP35247 375 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 KCNJ8Q15842 424 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 CARD17Q5XLA6 110 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 MRM1Q6IN84 353 aaKnown RBP12.58□□□□□ -0.4
LDLR-201ENST00000252444 TMPRSS12Q86WS5 348 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 RNF175Q8N4F7 328 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 OR5D14Q8NGL3 314 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 ADAMTS14Q8WXS8 1223 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 ITFG2Q969R8 447 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 MUL1Q969V5 352 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 TPK1Q9H3S4 243 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 PLAC1Q9HBJ0 212 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 AASSQ9UDR5 926 aa12.58□□□□□ -0.4
LDLR-201ENST00000252444 LINC00854A0A1B0GVQ3 168 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 EME2A4GXA9 379 aaPredicted RBP12.57□□□□□ -0.4
LDLR-201ENST00000252444 UPK1AO00322 258 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 RAB3BP20337 219 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 RPL27P61353 136 aaKnown RBP12.57□□□□□ -0.4
LDLR-201ENST00000252444 BNIP3Q12983 259 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 ZMAT1Q5H9K5 638 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 CCNJQ5T5M9 372 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 ANKRD37Q7Z713 158 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 OR6S1Q8NH40 331 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 ISOC1Q96CN7 298 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 RBM24Q9BX46 236 aaKnown RBP12.57□□□□□ -0.4
LDLR-201ENST00000252444 PLCXD1Q9NUJ7 323 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 NDUFAF4Q9P032 175 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 FUOMA2VDF0 154 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 SCGB2A1O75556 95 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 GLCEO94923 617 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 CELP19835 753 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 ARR3P36575 388 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 NDUFA5Q16718 116 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 GLYR1Q49A26 553 aaPredicted RBP12.57□□□□□ -0.4
LDLR-201ENST00000252444 DCDC5Q6ZRR9 648 aa12.57□□□□□ -0.4
LDLR-201ENST00000252444 PGAP1Q75T13 922 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms