RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 PRIM2P49643 509 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 KHKP50053 298 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 KRTAP10-3P60369 221 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 RAC3P60763 192 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 TUBA1BP68363 451 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 TUBA4AP68366 448 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 PSPHP78330 225 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 LCN2P80188 198 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 SLC9A3R2Q15599 337 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 EFNB3Q15768 340 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 TOMM34Q15785 309 aaPredicted RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 C4orf46Q504U0 113 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 ELFN2Q5R3F8 820 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 OLFML2AQ68BL7 652 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 ANKRD16Q6P6B7 361 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 TRMT10BQ6PF06 316 aaKnown RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 C16orf87Q6PH81 154 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 TMEM107Q6UX40 140 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 CASP12Q6UXS9 341 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 SYT10Q6XYQ8 523 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 TUBA1AQ71U36 451 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 DOK3Q7L591 496 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 COMMD6Q7Z4G1 85 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 ZC3HC1Q86WB0 502 aaKnown RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 CNTN4Q8IWV2 1026 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 FAM9CQ8IZT9 166 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 RIBC1Q8N443 379 aaPredicted RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 TMCO5AQ8N6Q1 288 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 PDPRQ8NCN5 879 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 OR4C3Q8NH37 302 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 B4GALNT2Q8NHY0 566 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 CDC26Q8NHZ8 85 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 WDR20Q8TBZ3 569 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 PHOSPHO1Q8TCT1 267 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 ZNF675Q8TD23 568 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 GPR151Q8TDV0 419 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 ZFP90Q8TF47 636 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 SGCDQ92629 289 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 GTF3AQ92664 365 aaKnown RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 RDH5Q92781 318 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 RAB8BQ92930 207 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 YIPF5Q969M3 257 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 MRGPRX4Q96LA9 322 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 ZNF48Q96MX3 618 aaPredicted RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 ZNF681Q96N22 645 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 SLC38A2Q96QD8 506 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 BBS4Q96RK4 519 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 DOK1Q99704 481 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 CITED1Q99966 193 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 FAIM2Q9BWQ8 316 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 KRTAP4-9Q9BYQ8 210 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 MS4A7Q9GZW8 240 aaPredicted RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 CDIP1Q9H305 208 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 COQ10BQ9H8M1 238 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 ZMAT3Q9HA38 289 aaKnown RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 PLAC1Q9HBJ0 212 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 GIMAP4Q9NUV9 329 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 EMC3Q9P0I2 261 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 RNF14Q9UBS8 474 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 SLC12A4Q9UP95 1085 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 CHMP2BQ9UQN3 213 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 MTO1Q9Y2Z2 717 aaKnown RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 REXO2Q9Y3B8 237 aaKnown RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 SOX21Q9Y651 276 aaPredicted RBP4.1□□□□□ -1.75
LIMS1-214ENST00000542845 X6R8D5 127 aa4.1□□□□□ -1.75
LIMS1-214ENST00000542845 IGLV3-32A0A0A0MS00 114 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 TMEM129A0AVI4 362 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 H0YIV9 168 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 J3QLI3 93 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 GTPBP1O00178 669 aaKnown RBP4.09□□□□□ -1.75
LIMS1-214ENST00000542845 SULT2B1O00204 365 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 NR5A2O00482 541 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 COQ9O75208 318 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 KRT33AO76009 404 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 SEC14L2O76054 403 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 IGLV1-40P01703 118 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 IL3P08700 152 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 LINGO3P0C6S8 592 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 GFAPP14136 432 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 PRKCAP17252 672 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 ACHEP22303 614 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 CALCRP30988 508 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 TIA1P31483 386 aaKnown RBP eCLIP4.09□□□□□ -1.75
LIMS1-214ENST00000542845 EIF1P41567 113 aaKnown RBP4.09□□□□□ -1.75
LIMS1-214ENST00000542845 ELK3P41970 407 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 ALDH3B1P43353 468 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 MAGEA3P43357 314 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 MAGEA6P43360 314 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 NCBP2P52298 156 aaKnown RBP eCLIP4.09□□□□□ -1.75
LIMS1-214ENST00000542845 SEC24CP53992 1094 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 PRKAG1P54619 331 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 RAG2P55895 527 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 TMEM33P57088 247 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 UBE2NP61088 152 aaKnown RBP4.09□□□□□ -1.75
LIMS1-214ENST00000542845 ATP6V0D1P61421 351 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 NAAAQ02083 359 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 TGFBR3Q03167 851 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 IFT88Q13099 833 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 GTF2H2Q13888 395 aa4.09□□□□□ -1.75
LIMS1-214ENST00000542845 E2F2Q14209 437 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms