RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CPAMD8Q8IZJ3 1885 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 DCHS1Q96JQ0 3298 aa13.86□□□□□ -0.19
SS18-215ENST00000580642 TMED7-TICAM2A0A0A6YYA0 188 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 C2orf72A6NCS6 295 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 MKRN2OSH3BPM6 223 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 DENRO43583 198 aaKnown RBP13.85□□□□□ -0.19
SS18-215ENST00000580642 OR2T1O43869 369 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 NPIPB7O75200 414 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 MT-ATP6P00846 226 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 FUT4P22083 530 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 DPP4P27487 766 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 CAPGP40121 348 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 MFSD13AQ14CX5 517 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 LAPTM4AQ15012 233 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 TOMM34Q15785 309 aaPredicted RBP13.85□□□□□ -0.19
SS18-215ENST00000580642 SLC36A3Q495N2 470 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 PRICKLE2Q7Z3G6 844 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 ADGRG3Q86Y34 549 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 ZADH2Q8N4Q0 377 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 ZFP62Q8NB50 900 aaPredicted RBP13.85□□□□□ -0.19
SS18-215ENST00000580642 FAM98AQ8NCA5 519 aaKnown RBP13.85□□□□□ -0.19
SS18-215ENST00000580642 ZNF555Q8NEP9 628 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 PIGQQ9BRB3 760 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.85□□□□□ -0.19
SS18-215ENST00000580642 UBQLN3Q9H347 655 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 PLA2G3Q9NZ20 509 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 CHRNA9Q9UGM1 479 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 FBXL2Q9UKC9 423 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 TMED7Q9Y3B3 224 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 SPTBN4Q9H254 2564 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 DOCK10Q96BY6 2186 aa13.85□□□□□ -0.19
SS18-215ENST00000580642 IGKV1D-42A0A075B6H8 117 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 TRAV36DV7A0A075B6V5 113 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 LRRC3CA6NJW4 275 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 B4DXG7 233 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 E9PQ18 207 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 GNB5O14775 395 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 SNAP29O95721 258 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 IFI30P13284 250 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 DNASE1L1P49184 302 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 ADARB1P78563 741 aaKnown RBP13.84□□□□□ -0.19
SS18-215ENST00000580642 NPRL3Q12980 569 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 SELENBP1Q13228 472 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 KEAP1Q14145 624 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 ZNF766Q5HY98 468 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 C3orf33Q6P1S2 294 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 KLHL17Q6TDP4 642 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 ARSKQ6UWY0 536 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 UNQ6494/PRO21346Q6UXR6 183 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 SULF2Q8IWU5 870 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 OSTF1Q92882 214 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 GTPBP3Q969Y2 492 aaKnown RBP13.84□□□□□ -0.19
SS18-215ENST00000580642 DDIT4LQ96D03 193 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 SGTBQ96EQ0 304 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 GNRHR2Q96P88 292 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 NIPSNAP1Q9BPW8 284 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 ANKRD60Q9BZ19 345 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 GRIP2Q9C0E4 1043 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 OR2B2Q9GZK3 357 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 TOR3AQ9H497 397 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 MEPEQ9NQ76 525 aaPredicted RBP13.84□□□□□ -0.19
SS18-215ENST00000580642 FAM118AQ9NWS6 357 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 TUBA8Q9NY65 449 aaPredicted RBP13.84□□□□□ -0.19
SS18-215ENST00000580642 IL20Q9NYY1 176 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 LRCH1Q9Y2L9 728 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 HSPE1-MOB4S4R3N1 261 aa13.84□□□□□ -0.19
SS18-215ENST00000580642 CACNA1AO00555 2505 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 EFCAB9A8MZ26 197 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 SUSD5O60279 629 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 ZIC3O60481 467 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 FZD7O75084 574 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 GLSO94925 669 aaPredicted RBP13.83□□□□□ -0.2
SS18-215ENST00000580642 RCBTB2O95199 551 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 HPNP05981 417 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 HK1P19367 917 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 CRYZQ08257 329 aaKnown RBP13.83□□□□□ -0.2
SS18-215ENST00000580642 FOXF1Q12946 379 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 RAPSNQ13702 412 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 DCBLD2Q96PD2 775 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 PITX2Q99697 317 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 NDEL1Q9GZM8 345 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 FKRPQ9H9S5 495 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 DEPPQ9NTK1 212 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 REV1Q9UBZ9 1251 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 ZNF229Q9UJW7 825 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 DKKL1Q9UK85 242 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 VDAC3Q9Y277 283 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 AP4B1Q9Y6B7 739 aa13.83□□□□□ -0.2
SS18-215ENST00000580642 APC2O95996 2303 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 LOC100130705A0A1B0GUX0 176 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 UNC119BA6NIH7 251 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 GJE1A6NN92 205 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 ENO4A6NNW6 628 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 C17orf51A8MQB3 221 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 ACOT7O00154 380 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 HCN1O60741 890 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 CRISP1P54107 249 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 EGR4Q05215 589 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 KCNAB2Q13303 367 aa13.82□□□□□ -0.2
SS18-215ENST00000580642 MED21Q13503 144 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms