RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 S100A14Q9HCY8 104 aa16.21■□□□□ 0.19
SQSTM1-204ENST00000453046 POLE3Q9NRF9 147 aa16.21■□□□□ 0.19
SQSTM1-204ENST00000453046 ADPRHL2Q9NX46 363 aa16.21■□□□□ 0.19
SQSTM1-204ENST00000453046 GALNT8Q9NY28 637 aa16.21■□□□□ 0.19
SQSTM1-204ENST00000453046 MPDZO75970 2070 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 A0A0G2JPF8 293 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 A0A1W2PNV4 684 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 HNRNPCL2B2RXH8 293 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 HNRNPCL3B7ZW38 293 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 NDUFB5O43674 189 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 SMNDC1O75940 238 aaKnown RBP eCLIP16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 ATP6V1G2O95670 118 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 HNRNPCL4P0DMR1 293 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 SLC7A1P30825 629 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 RPS3AP61247 264 aaKnown RBP16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 RCN1Q15293 331 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 GLYR1Q49A26 553 aaPredicted RBP16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 GPAT3Q53EU6 434 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 RPS26P11Q5JNZ5 115 aaPredicted RBP16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 DCST2Q5T1A1 773 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 APOOLQ6UXV4 268 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 EIF3MQ7L2H7 374 aaKnown RBP16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 PYDC1Q8WXC3 89 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 TAMM41Q96BW9 452 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 SPATA5L1Q9BVQ7 753 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 PINK1Q9BXM7 581 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 SLC38A1Q9H2H9 487 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 LIME1Q9H400 295 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 RNPEPL1Q9HAU8 725 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 CCM2LQ9NUG4 571 aaPredicted RBP16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 STOML1Q9UBI4 398 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 ST6GALNAC2Q9UJ37 374 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 VDAC3Q9Y277 283 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 KCNE3Q9Y6H6 103 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 AKAP6Q13023 2319 aa16.2■□□□□ 0.18
SQSTM1-204ENST00000453046 ALG1L2C9J202 215 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 H0YC42 278 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 CASKO14936 926 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 GCM2O75603 506 aaPredicted RBP16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 SERPINB7O75635 380 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 KCNK2O95069 426 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 H6PDO95479 791 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 OXSR1O95747 527 aaPredicted RBP16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 CRHP06850 196 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 DNASE1P24855 282 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 SUCLG1P53597 346 aaKnown RBP16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 CRYBA2P53672 197 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 TPD52P55327 224 aaPredicted RBP16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 SGCBQ16585 318 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 FAM98BQ52LJ0 330 aaKnown RBP16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 CYBRD1Q53TN4 286 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 PPP4R4Q6NUP7 873 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 GATSQ8NAP1 163 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 OR4C3Q8NH37 302 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 CANT1Q8WVQ1 401 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 RASSF5Q8WWW0 418 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 LZICQ8WZA0 190 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 PMM1Q92871 262 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 SDF2Q99470 211 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 RASSF4Q9H2L5 321 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 WDR45Q9Y484 360 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 GPC6Q9Y625 555 aaPredicted RBP16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 AP4B1Q9Y6B7 739 aa16.19■□□□□ 0.18
SQSTM1-204ENST00000453046 IGLV3-32A0A0A0MS00 114 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 A8MXE2 369 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 H3BNX3 289 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 SCDO00767 359 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 KIAA0513O60268 411 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 STX11O75558 287 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 TNFSF13O75888 250 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 ZNF682O95780 498 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 FCGR1AP12314 374 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 TBXA2RP21731 343 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 SIRPAP78324 504 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 FRRS1Q6ZNA5 592 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 ZNF619Q8N2I2 560 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 PAPD5Q8NDF8 572 aaKnown RBP16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 DACH2Q96NX9 599 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 CACYBPQ9HB71 228 aaKnown RBP16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 ARMC1Q9NVT9 282 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 STX18Q9P2W9 335 aaKnown RBP16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 NDRG3Q9UGV2 375 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 AURKCQ9UQB9 309 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 PLEKHA6Q9Y2H5 1048 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 MED12LQ86YW9 2145 aa16.18■□□□□ 0.18
SQSTM1-204ENST00000453046 SH3D21A4FU49 640 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 SHISA8B8ZZ34 492 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 M0QX08 132 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 MSTNO14793 375 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 PRKD3O94806 890 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 MFN2O95140 757 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 NGFRP08138 427 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 RAP2AP10114 183 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 LCN1P31025 176 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 ZNF41P51814 821 aaPredicted RBP16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 CLDN15P56746 228 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 CLDN20P56880 219 aa16.17■□□□□ 0.18
SQSTM1-204ENST00000453046 CHRNB3Q05901 458 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms