RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 STRAPQ9Y3F4 350 aaKnown RBP3.18□□□□□ -1.9
CD44-235ENST00000532339 COLEC10Q9Y6Z7 277 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 HERC1Q15751 4861 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 HCFC1P51610 2035 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 TRBV4-1A0A0J9YWV2 114 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 CCDC162PA2VCL2 907 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 MSGN1A6NI15 193 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 CCDC69A6NI79 296 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 A8MU76 341 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 ZNF732B4DXR9 585 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 SLC28A1O00337 649 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 ALOX15BO15296 676 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 SAP30O75446 220 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 GRAP2O75791 330 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 CDC123O75794 336 aaPredicted RBP3.17□□□□□ -1.9
CD44-235ENST00000532339 IGHEP01854 428 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 MT-ND2P03891 347 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 SKILP12757 684 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 CPA3P15088 417 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 GJB2P29033 226 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 CD70P32970 193 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 PEX19P40855 299 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 CSKP41240 450 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 GALK2Q01415 458 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 TSTA3Q13630 321 aaPredicted RBP3.17□□□□□ -1.9
CD44-235ENST00000532339 CDH18Q13634 790 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 ZNF74Q16587 644 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 SPECC1LQ69YQ0 1117 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 CD164L2Q6UWJ8 174 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 ARSKQ6UWY0 536 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 DLEU7Q6UYE1 221 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 FCRLAQ7L513 359 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 ADAMTSL2Q86TH1 951 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 STHQ8IWL8 128 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.17□□□□□ -1.9
CD44-235ENST00000532339 SIDT2Q8NBJ9 832 aaKnown RBP3.17□□□□□ -1.9
CD44-235ENST00000532339 HAS2Q92819 552 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 ULK4Q96C45 1275 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 CNDP1Q96KN2 507 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 IP6K3Q96PC2 410 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 PKP2Q99959 881 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 FAM213AQ9BRX8 229 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 LRRC2Q9BYS8 371 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 UCK2Q9BZX2 261 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 XPO4Q9C0E2 1151 aaKnown RBP3.17□□□□□ -1.9
CD44-235ENST00000532339 PPANQ9NQ55 473 aaKnown RBP3.17□□□□□ -1.9
CD44-235ENST00000532339 MAN2C1Q9NTJ4 1040 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 ZCCHC3Q9NUD5 404 aaKnown RBP3.17□□□□□ -1.9
CD44-235ENST00000532339 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.17□□□□□ -1.9
CD44-235ENST00000532339 TSPAN16Q9UKR8 245 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 ROS1P08922 2347 aa3.17□□□□□ -1.9
CD44-235ENST00000532339 KIAA1109Q2LD37 5005 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 SCN1AP35498 2009 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 COL7A1Q02388 2944 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 SRRM4A7MD48 611 aaKnown RBP3.16□□□□□ -1.9
CD44-235ENST00000532339 A8MVM7 634 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 MCF2LO15068 1137 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 CHUKO15111 745 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 PSMD3O43242 534 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 HCRTO43612 131 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 CYTIPO60759 359 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 DNAJB6O75190 326 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 KHDRBS3O75525 346 aaKnown RBP3.16□□□□□ -1.9
CD44-235ENST00000532339 SPAG6O75602 509 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 B3GALNT1O75752 331 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 CHRNGP07510 517 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 SLC2A2P11168 524 aaPredicted RBP3.16□□□□□ -1.9
CD44-235ENST00000532339 AREGP15514 252 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 AZU1P20160 251 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 CCNA2P20248 432 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 KRTAP5-9P26371 169 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 OR3A2P47893 321 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 PGFP49763 221 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 CNN1P51911 297 aaKnown RBP3.16□□□□□ -1.9
CD44-235ENST00000532339 DCDC1P59894 354 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 SRP54P61011 504 aaKnown RBP3.16□□□□□ -1.9
CD44-235ENST00000532339 SGCGQ13326 291 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 GPR50Q13585 617 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 SGSM1Q2NKQ1 1148 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 SNAI3Q3KNW1 292 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 FILIP1LQ4L180 1135 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 TOR1AIP1Q5JTV8 583 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 C10orf120Q5SQS8 335 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 PRAMEF7Q5VXH5 474 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 SLC27A4Q6P1M0 643 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 FAM199XQ6PEV8 388 aaPredicted RBP3.16□□□□□ -1.9
CD44-235ENST00000532339 DOK6Q6PKX4 331 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 WDR74Q6RFH5 385 aaPredicted RBP3.16□□□□□ -1.9
CD44-235ENST00000532339 MFSD7Q6UXD7 560 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 C17orf107Q6ZR85 190 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 TAF8Q7Z7C8 310 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 RAB43Q86YS6 212 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 ELMOD2Q8IZ81 293 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 BATF2Q8N1L9 274 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 FBXW8Q8N3Y1 598 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 TEX26Q8N6G2 289 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 TMEM185AQ8NFB2 350 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 OR4A16Q8NH70 328 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 TBCKQ8TEA7 893 aa3.16□□□□□ -1.9
CD44-235ENST00000532339 AGAP11Q8TF27 550 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms