RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PCDHGA9Q9Y5G4 932 aaKnown RBP7.77□□□□□ -1.17
HMGB1-203ENST00000341423 WDR90Q96KV7 1748 aa7.77□□□□□ -1.17
HMGB1-203ENST00000341423 LDLRP01130 860 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 APOA1P02647 267 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 APOA2P02652 100 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 GRPP07492 148 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 CD44P16070 742 aaKnown RBP7.76□□□□□ -1.17
HMGB1-203ENST00000341423 TEAD1P28347 426 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 SCARB2Q14108 478 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 PLXDC2Q6UX71 529 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 UBE2DNLQ8IWF7 75 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 DHRSXQ8N5I4 330 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 OR4D6Q8NGJ1 314 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 TMEM181Q9P2C4 612 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 MGAT4AQ9UM21 535 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 SCN7AQ01118 1682 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 A0A075B6Q4 140 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 GPANK1O95872 356 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 HOXD11P31277 338 aaPredicted RBP7.76□□□□□ -1.17
HMGB1-203ENST00000341423 TSC22D1Q15714 1073 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 GLYR1Q49A26 553 aaPredicted RBP7.76□□□□□ -1.17
HMGB1-203ENST00000341423 LRFN4Q6PJG9 635 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 OR52P1PQ8NH57 321 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 OR51F2Q8NH61 342 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 TWIST2Q8WVJ9 160 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 CORO2AQ92828 525 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 MBOAT4Q96T53 435 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF251Q9BRH9 671 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF649Q9BS31 505 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 EHD1Q9H4M9 534 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 MTHFD2LQ9H903 347 aaPredicted RBP7.76□□□□□ -1.17
HMGB1-203ENST00000341423 ZBTB26Q9HCK0 441 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 C11orf16Q9NQ32 467 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 LHX3Q9UBR4 397 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 SLC17A4Q9Y2C5 497 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 CORINQ9Y5Q5 1042 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 PIGBOS1A0A0B4J2F0 54 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 LMX1BO60663 402 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 TMEM225BP0DP42 221 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 CRYZQ08257 329 aaKnown RBP7.76□□□□□ -1.17
HMGB1-203ENST00000341423 E2F2Q14209 437 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 UGT3A2Q3SY77 523 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 ALKAL1Q6UXT8 129 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 ESPNLQ6ZVH7 1005 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 ZDHHC13Q8IUH4 622 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 SHISA5Q8N114 240 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 FDCSPQ8NFU4 85 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 OR4X2Q8NGF9 303 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 C8orf46Q8TAG6 207 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF570Q96NI8 536 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 OR2A14Q96R47 310 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 BHLHE41Q9C0J9 482 aaPredicted RBP7.76□□□□□ -1.17
HMGB1-203ENST00000341423 CRISPLD1Q9H336 500 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 DLL4Q9NR61 685 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 POLE3Q9NRF9 147 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 SERGEFQ9UGK8 458 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 ANKRD26Q9UPS8 1709 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 LRRN3E7EW58 273 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 H7C1Q1 480 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 MAFKO60675 156 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 CHRNGP07510 517 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 CNN3Q15417 329 aaKnown RBP7.76□□□□□ -1.17
HMGB1-203ENST00000341423 CENPVQ7Z7K6 275 aaPredicted RBP7.76□□□□□ -1.17
HMGB1-203ENST00000341423 UXS1Q8NBZ7 420 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 OR2T12Q8NG77 320 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 OR10H4Q8NGA5 316 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 SLC35A4Q96G79 324 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 DERL2Q9GZP9 239 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 GPR52Q9Y2T5 361 aa7.76□□□□□ -1.17
HMGB1-203ENST00000341423 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.76□□□□□ -1.171e-6■■■■□ 22.6
HMGB1-203ENST00000341423 SNAPC5O75971 98 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 GNB3P16520 340 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 NPR2P20594 1047 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ARNTP27540 789 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 TACR3P29371 465 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 HMGCS1Q01581 520 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 LIN54Q6MZP7 749 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 OR2T4Q8NH00 348 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 CCDC120Q96HB5 630 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PCGF1Q9BSM1 259 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 SFXN3Q9BWM7 321 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 COMMD9Q9P000 198 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 MRPS18BQ9Y676 258 aaKnown RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 E9PLN8 166 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PGM1P36871 562 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 CDKN2BP42772 138 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 TNFAIP6P98066 277 aaPredicted RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 TGFBIQ15582 683 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 KCNMB1Q16558 191 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 FAM209AQ5JX71 171 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PLCXD3Q63HM9 321 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PGAP1Q75T13 922 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 CMC1Q7Z7K0 106 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 MARCH9Q86YJ5 346 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 TMEM139Q8IV31 216 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 SFTPA2Q8IWL1 248 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 SFTPA1Q8IWL2 248 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 AKAP1Q92667 903 aaKnown RBP eCLIP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 TMEM41AQ96HV5 264 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 VKORC1Q9BQB6 163 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms